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Effect of population stratification on SNP-by-environment interaction.


ABSTRACT: Proportions of false-positive rates in genome-wide association analysis are affected by population stratification, and if it is not correctly adjusted, the statistical analysis can produce the large false-negative finding. Therefore various approaches have been proposed to adjust such problems in genome-wide association studies. However, in spite of its importance, a few studies have been conducted in genome-wide single nucleotide polymorphism (SNP)-by-environment interaction studies. In this report, we illustrate in which scenarios can lead to the false-positive rates in association mapping and approach to maintaining the overall type-1 error rate.

SUBMITTER: An J 

PROVIDER: S-EPMC6829023 | biostudies-literature | 2019 Dec

REPOSITORIES: biostudies-literature

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Effect of population stratification on SNP-by-environment interaction.

An Jaehoon J   Won Sungho S   Lutz Sharon M SM   Hecker Julian J   Lange Christoph C  

Genetic epidemiology 20190820 8


Proportions of false-positive rates in genome-wide association analysis are affected by population stratification, and if it is not correctly adjusted, the statistical analysis can produce the large false-negative finding. Therefore various approaches have been proposed to adjust such problems in genome-wide association studies. However, in spite of its importance, a few studies have been conducted in genome-wide single nucleotide polymorphism (SNP)-by-environment interaction studies. In this re  ...[more]

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