Dataset Information

Termite-Induced Injuries to Maize and Baby Corn under Organic and Conventional Farming Systems in the Central Highlands of Kenya.

ABSTRACT: Termite-induced injuries to maize and baby corn were evaluated in on-going comparison experiments on organic and conventional farming systems at two trial sites in the Central Highlands of Kenya (Chuka and Thika). The farming systems were established in 2007 at two input levels: Low input level, representing subsistence farming (Conv-Low, Org-Low) and high input level, representing commercial farming (Conv-High, Org-High). Termite-induced injuries to maize and baby corn, such as tunneling the stem or lodging the whole plant were assessed over two cropping seasons. The lodging occurred exclusively at Thika. It first became apparent in the Org-Low system, with most of lodging occurring during the vegetative stage. Baby corn grown under high input systems showed increasing lodging from the late vegetative crop stage and peaked before the final harvest. Tunneling was recorded at both sites, but was generally below 5%, with no significant differences between the farming systems. Overall, the injury patterns caused by termites appear to be a function of the plant growth stage, termite colony activities, trial site, and the types and levels of fertilizer input. Thus, the management practice used in each farming system (organic or conventional) might have greater influence on crop injuries than the type of farming system itself or the termite abundance within each system.

SUBMITTER: Anyango JJ

PROVIDER: S-EPMC6835427 | biostudies-literature | 2019 Oct

REPOSITORIES: biostudies-literature

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Termite-Induced Injuries to Maize and Baby Corn under Organic and Conventional Farming Systems in the Central Highlands of Kenya.

Anyango John J JJ Bautze David D Fiaboe Komi K M KKM Lagat Zipporah O ZO Muriuki Anne W AW Stöckli Sibylle S Onyambu Gladys K GK Musyoka Martha W MW Karanja Edward N EN Adamtey Noah N

Insects 20191022 10

Termite-induced injuries to maize and baby corn were evaluated in on-going comparison experiments on organic and conventional farming systems at two trial sites in the Central Highlands of Kenya (Chuka and Thika). The farming systems were established in 2007 at two input levels: Low input level, representing subsistence farming (Conv-Low, Org-Low) and high input level, representing commercial farming (Conv-High, Org-High). Termite-induced injuries to maize and baby corn, such as tunneling the st ...[more]

PMID: 31652540

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Project description:Management practices such as tillage, crop rotation, irrigation, organic and inorganic inputs application are known to influence diversity and function of soil microbial populations. In this study, we investigated the effect of conventional versus organic farming systems at low and high input levels on structure and diversity of prokaryotic microbial communities. Soil samples were collected from the ongoing long-term farming system comparison trials established in 2007 at Chuka and Thika in Kenya. Physicochemical parameters for each sample were analyzed. Total DNA and RNA amplicons of variable region (V4-V7) of the 16S rRNA gene were generated on an Illumina platform using the manufacturer's instructions. Diversity indices and statistical analysis were done using QIIME2 and R packages, respectively. A total of 29,778,886 high quality reads were obtained and assigned to 16,176 OTUs at 97% genetic distance across both 16S rDNA and 16S rRNA cDNA datasets. The results pointed out a histrionic difference in OTUs based on 16S rDNA and 16S rRNA cDNA. Precisely, while 16S rDNA clustered by site, 16S rRNA cDNA clustered by farming systems. In both sites and systems, dominant phylotypes were affiliated to phylum Actinobacteria, Proteobacteria and Acidobacteria. Conventional farming systems showed a higher species richness and diversity compared to organic farming systems, whilst 16S rRNA cDNA datasets were similar. Physiochemical factors were associated differently depending on rRNA and rDNA. Soil pH, electrical conductivity, organic carbon, nitrogen, potassium, aluminium, zinc, iron, boron and micro-aggregates showed a significant influence on the observed microbial diversity. The observed higher species diversity in the conventional farming systems can be attributed to the integration of synthetic and organic agricultural inputs. These results show that the type of inputs used in a farming system not only affect the soil chemistry but also the microbial population dynamics and eventually the functional roles of these microbes.

Project description:One of the most important challenges in agriculture is to determine the effectiveness and environmental impact of certain farming practices. The aim of present study was to determine and compare the taxonomic composition of the microbiomes established in soil following long-term exposure (14 years) to a conventional and organic farming systems (CFS and OFS accordingly). Soil from unclared forest next to the fields was used as a control. The analysis was based on RT-PCR and pyrosequencing of 16S rRNA genes of bacteria and archaea. The number of bacteria was significantly lower in CFS than in OFS and woodland. The highest amount of archaea was detected in woodland, whereas the amounts in CFS and OFS were lower and similar. The most common phyla in the soil microbial communities analyzed were Proteobacteria (57.9%), Acidobacteria (16.1%), Actinobacteria (7.9%), Verrucomicrobia (2.0%), Bacteroidetes (2.7%) and Firmicutes (4.8%). Woodland soil differed from croplands in the taxonomic composition of microbial phyla. Croplands were enriched with Proteobacteria (mainly the genus Pseudomonas), while Acidobacteria were detected almost exclusively in woodland soil. The most pronounced differences between the CFS and OFS microbiomes were found within the genus Pseudomonas, which significantly (p<0,05) increased its number in CFS soil compared to OFS. Other differences in microbiomes of cropping systems concerned minor taxa. A higher relative abundance of bacteria belonging to the families Oxalobacteriaceae, Koribacteriaceae, Nakamurellaceae and genera Ralstonia, Paenibacillus and Pedobacter was found in CFS as compared with OFS. On the other hand, microbiomes of OFS were enriched with proteobacteria of the family Comamonadaceae (genera Hylemonella) and Hyphomicrobiaceae, actinobacteria from the family Micrococcaceae, and bacteria of the genera Geobacter, Methylotenera, Rhizobium (mainly Rhizobium leguminosarum) and Clostridium. Thus, the fields under OFS and CFS did not differ greatly for the composition of the microbiome. These results, which were also confirmed by cluster analysis, indicated that microbial communities in the field soil do not necessarily differ largely between conventional and organic farming systems.

Dataset Information

Termite-Induced Injuries to Maize and Baby Corn under Organic and Conventional Farming Systems in the Central Highlands of Kenya.

Publications

Termite-Induced Injuries to Maize and Baby Corn under Organic and Conventional Farming Systems in the Central Highlands of Kenya.

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