Effect of nitrogen application rate on soil fungi community structure in a rice-fish mutualistic system.
Ontology highlight
ABSTRACT:
SUBMITTER: Cai S
PROVIDER: S-EPMC6838126 | biostudies-literature | 2019 Nov
REPOSITORIES: biostudies-literature
Publications
Effect of nitrogen application rate on soil fungi community structure in a rice-fish mutualistic system.
Cai Shumei S Lv Weiguang W Zhu Haitao H Zhang Deshan D Fu Zishi Z Zhang Hanlin H Xu Sixin S
Scientific reports 20191107 1
Rice-fish mutualistic production systems rationalise the use of water and soil resources in an improved approach to sustainable food production. However, drivers of fungi community structure in paddy soil, including effects of nitrogen (N) application rate, are unclear in these systems. Here, we assessed soil fungi community and soil physicochemical responses in paddy soil to contrasting rates of N application in a rice-fish system. To clarify the mutualistic effects, the rice-fish system was co ...[more]
Similar Datasets
Project description:The effect of nitrogen fertilizer application on the quality of rice post-storage is not well understood. The eating and cooking quality (ECQ) of rice treated with 0 (CK, control), 160 (IN, insufficient nitrogen), 260 (AN, adequate nitrogen), and 420 (EN, excessive nitrogen) kg N/ha was analyzed over 12 months of storage. Results showed that the rate of nitrogen fertilizer application had no significant impact on the changes in taste value during storage. However, EN application significantly increased the hardness (p < 0.05), reduced the gumminess (p < 0.05), and delayed the decline in the viscosity of rice paste by two months after one-year storage, compared with other treatments. In conclusion, although EN application resulted in an inferior texture of rice, it delayed the quality change by two months during storage. It was demonstrated that a rational nitrogen application rate (0-260 kg N/ha) for rice cultivation is particularly important to obtain high ECQ; however, EN may be beneficial for the stability of the ECQ during storage.
| S-EPMC8213157 | biostudies-literature
Project description:Ecosystems across the globe receive elevated inputs of nutrients, but the consequences of this for soil fungal guilds that mediate key ecosystem functions remain unclear. We find that nitrogen and phosphorus addition to 25 grasslands distributed across four continents promotes the relative abundance of fungal pathogens, suppresses mutualists, but does not affect saprotrophs. Structural equation models suggest that responses are often indirect and primarily mediated by nutrient-induced shifts in plant communities. Nutrient addition also reduces co-occurrences within and among fungal guilds, which could have important consequences for belowground interactions. Focusing only on plots that received no nutrient addition, soil properties influence pathogen abundance globally, whereas plant community characteristics influence mutualists, and climate influence saprotrophs. We show consistent, guild-level responses that enhance our ability to predict shifts in soil function related to anthropogenic eutrophication, which can have longer-term consequences for plant communities.
| S-EPMC8190096 | biostudies-literature
Project description:The high productivity and efficient nutrient utilization in rice-fish integrated farming system are well reported. However, the characteristics of soil bacterial communities and their relationship with soil nutrient availability in rice-fish field remain unclear. In this study, we selected three paddy fields, including a rice monoculture field and two rice-fish fields with different planting years, to investigate the soil bacterial community composition with Illumina MiSeq sequencing technology. The results indicated that the soil properties were significantly different among different rice farming systems. The soil bacterial community composition in the rice-fish field was significantly different from that in the rice monoculture field. Five of the top 15 phyla were observed with significant differences and Nitrospirae was the most significant one. However, no taxa observed with significance between the rice planting area and aquaculture area no matter in the 1st or 5th year of rice-fish field. RDA analysis showed that the soil bacterial community differentiation in the 5th year of rice-fish field was positively correlated with soil properties, such as AN and OM contents, EC and pH value. Although the rice yields in rice-fish field decreased, the net economic benefit of the rice-fish system enhanced obviously due to the high value of aquaculture animals.
| S-EPMC8149657 | biostudies-literature
Project description:Many trees form ectomycorrhizal symbiosis with fungi. During symbiosis, the tree roots supply sugar to the fungi in exchange for nitrogen, and this process is critical for the nitrogen and carbon cycles in forest ecosystems. However, the extents to which ectomycorrhizal fungi can liberate nitrogen and modify the soil organic matter and the mechanisms by which they do so remain unclear since they have lost many enzymes for litter decomposition that were present in their free-living, saprotrophic ancestors. Using time-series spectroscopy and transcriptomics, we examined the ability of two ectomycorrhizal fungi from two independently evolved ectomycorrhizal lineages to mobilize soil organic nitrogen. Both species oxidized the organic matter and accessed the organic nitrogen. The expression of those events was controlled by the availability of glucose and inorganic nitrogen. Despite those similarities, the decomposition mechanisms, including the type of genes involved as well as the patterns of their expression, differed markedly between the two species. Our results suggest that in agreement with their diverse evolutionary origins, ectomycorrhizal fungi use different decomposition mechanisms to access organic nitrogen entrapped in soil organic matter. The timing and magnitude of the expression of the decomposition activity can be controlled by the below-ground nitrogen quality and the above-ground carbon supply.
2018-11-30 | GSE110485 | GEO
Project description:The bacterial community and diversity in mulberry field soils with different application ages of inorganic nitrogen fertilizer (4Y, 4-year-old; 17Y, 17-year-old; 32Y, 32-year- old) were investigated using next-generation sequencing. The results demonstrated that the application ages of nitrogen fertilizer significantly altered soil bacterial community and diversity. Soil bacterial Shannon diversity index and Chao 1 index decreased with the consecutive application of nitrogen fertilizer, and the 4Y soil exhibited the highest bacterial relative abundance and diversity. Of 45 bacterial genera (relative abundance ratio of genera greater than 0.3%), 18 were significantly affected by the plant age, and seven belong to Acidobacteria. The relative abundances of Acidobacteria Gp 1, Gp4 and Gp6 in the 4Y soil were significantly lower than that of in the 17Y and 32Y soils. However, the relative abundance of Pseudononas sp. in the 4Y soil was significantly higher than that of in the 17Y and 32Y soils. Most microbial parameters were significantly affected by soil pH and organic matter content which were significantly changed by long-term application of inorganic nitrogen fertilizer.
| S-EPMC5158035 | biostudies-literature
Project description:Intensive application of inorganic nitrogen underlies marked increase in crop production yet imposes detrimental impact on ecosystems, hence it is crucial for future sustainable agriculture to improve nitrogen-use efficiency (NUE). Here we report the genetic basis of NUE associated with the local soil adaptation in rice. With a diverse rice germplasm panel collected from different ecogeographic regions, we performed genome-wide association study on tillering response to nitrogen (TRN), the most correlated trait with NUE of rice, and identified OsTCP19 as a modulator of TRN via transcriptionally responding to nitrogen and targeting to Dwarf and Low-Tillering (DLT), a tiller-promoting gene. A 29-bp InDel in OsTCP19 promoter confers differential transcription response to nitrogen and TRN variation among rice varieties. The high-TRN allele of OsTCP19 (OsTCP19-H) is prevalent in wild rice population, but largely lost in modern cultivars correlating with increased local soil nitrogen content, suggesting that it might have contributed to geographic adaptation in rice. Introgression of OsTCP19-H into modern rice cultivars boosts grain yield and NUE under low or moderate nitrogen levels, demonstrating its enormous potential for rice breeding and environment amelioration through reducing nitrogen application.
2020-11-12 | GSE161265 | GEO
Project description:Overuse of nitrogen (N) fertilizer has led to low N use efficiency (NUE) and high N loss in single rice cropping systems in southeast China. Application of controlled-release urea (CRU) is considered as an effective N fertilizer practice for improving crop yields and NUE. Here, field experiments were conducted during 2015-2017 to assess the effects of two CRUs (resin-coated urea (RCU) and polyurethane-coated urea (PCU)) on rice yields, NUE and soil fertility at two sites (Lincheng town (LC) and Xintang town (XT)). Four treatments were established at each site: (1) control with no N application (CK), (2) split application of conventional urea (U, 270?kg?N ha-1), (3) single basal application of RCU (RCU, 216?kg?N ha-1), and (4) single basal application of PCU (PCU, 216?kg?N ha-1). The N application rate in the CRU treatment compared to the U treatment was reduced by 20%. However, the results showed that, compared to split application of urea, single basal application of CRU led to similar rice grain yields and aboveground biomass at both sites. No significant difference in the N uptake by rice plant was observed between the U and CRU treatments at either site. There were no significant differences in the N apparent recovery efficiency (NARE) among the U, RCU and PCU treatments, with the exception of that in XT in 2015. Compared to application of U, application of CRU increased the N agronomic efficiency (NAE) and N partial factor productivity (NPFP) by 17.4-52.6% and 23.4-29.8% at the LC site, and 15.0-84.1% and 23.2-33.4% at the XT site, respectively, during 2015-2017. Yield component analysis revealed that greater rice grain yield in response to N fertilizer was attributed mainly to the number of panicles per m2, which increased in the fertilized treatments compared to the CK treatment. The application of CRU did not affect the soil fertility after rice harvest in 2016. Overall, these results suggest that single basal application of CRU constitutes a promising alternative N management practice for reducing N application rates, time- and labor-consuming in rice production in southeast China.
| S-EPMC7320022 | biostudies-literature
Project description:Combined application of biochar and nitrogen (N) fertilizer has the potential to reduce N losses from soil. However, the effectiveness of biochar amendment on N management can vary with biochar types with different physical and chemical properties. This study aimed to assess the effect of two types of hardwood biochar with different ash contents and cation exchange capacity (CEC) on soil N mineralization and nitrous oxide (N2O) production when applied alone and in combination with N fertilizer. Soil samples collected from a temperate pasture system were amended with two types of biochar (B1 and B2), urea, and urea plus biochar, and incubated for 60 days along with soil control (without biochar or urea addition). Soil nitrate N, ammonium N, ammonia-oxidizing bacteria amoA gene transcripts, and N2O production were measured during the experiment. Compared to control, addition of B1 (higher CEC and lower ash content) alone decreased nitrate N concentration by 21% to 45% during the incubation period while the addition of B2 (lower CEC and higher ash content) alone increased the nitrate N concentration during the first 10 days. Biochar B1 also reduced the abundance of amoA transcripts by 71% after 60 days. Compared to B1 + urea, B2 + urea resulted in a significantly greater initial increase in soil ammonium and nitrate N concentrations. However, B2 + urea had a significantly lower 60-day cumulative N2O emission compared to B1 + urea. Overall, when applied with urea, the biochar with higher CEC reduced ammonification and nitrification rates, while biochar with higher ash content reduced N N2O production. Our study demonstrated that biochar has the potential to enhance N retention in soil and reduce N2O emission when it is applied with urea, but the specific effects of the added biochar depend on its physical and chemical properties.
| S-EPMC7990209 | biostudies-literature
Project description:Soil microorganisms play vital roles in energy flow and soil nutrient cycling and, thus, are important for crop production. A detailed understanding of the complex responses of microbial communities to diverse organic manure and chemical fertilizers (CFs) is crucial for agroecosystem sustainability. However, little is known about the response of soil fungal communities and soil nutrients to manure and CFs, especially under double-rice cropping systems. In this study, we investigated the effects of the application of combined manure and CFs to various fertilization strategies, such as no N fertilizer (Neg-CF); 100% chemical fertilizer (Pos-CF); 60% cattle manure (CM) + 40% CF (high-CM); 30% CM + 70% CF (low-CM); 60% poultry manure (PM) + 40% CF (high-PM), and 30% PM + 70% CF (low-PM) on soil fungal communities' structure and diversity, soil environmental variables, and rice yield. Results showed that synthetic fertilizer plus manure addition significantly increased the soil fertility and rice grain yield compared to sole CFs' application. Moreover, the addition of manure significantly changed the soil fungal community structure and increased the relative abundance of fungi such as phyla Ascomycota, Basidiomycota, Mortierellomycota, and Rozellomycota. The relative abundances dramatically differed at each taxonomic level, especially between manured and non-manured regimes. Principal coordinates analysis (PCoA) exhibited greater impacts of the addition of manure amendments than CFs on fungal community distributions. Redundancy analysis showed that the dominant fungal phyla were positively correlated with soil pH, soil organic C (SOC), total N, and microbial biomass C, and the fungal community structure was strongly affected by SOC. Network analysis explored positive relationships between microorganisms and could increase their adaptability in relevant environments. In addition, the structural equation model (SEM) shows the relationship between microbial biomass, soil nutrients, and rice grain yield. The SEM showed that soil nutrient contents and their availability directly affect rice grain yield, while soil fungi indirectly affect grain yield through microbial biomass production and nutrient levels. Our results suggest that manure application combined with CFs altered soil biochemical traits and soil fungal community structure and counteracted some of the adverse effects of the synthetic fertilizer. Overall, the findings of this research suggest that the integrated application of CF and manure is a better approach for improving soil health and rice yield.
| S-EPMC9330912 | biostudies-literature
Project description:Litter bag method was conducted to investigate the decomposition characteristics of rice straw (6000 kg ha-1) and its associated microbial community under different nitrogen (N) addition rates (0, 90, 180 and 270 kg N ha-1) under double-rice rotation. Generally, straw mass reduction and nutrient release of rice straw were faster in early stage of decomposition (0-14 days after decomposition), when easily-utilized carbohydrates and amines were the preferential substrates for involved decomposers. Straw-associated N-acetyl-glucosamidase and L-leucine aminopeptidase activities, which were higher under 180 and 270 kg N ha-1 addition, showed more activities in the early stage of decomposition. Gram-positive bacteria were the quantitatively predominant microorganisms, while fungi and actinomycetes played a key role in decomposing recalcitrant compounds in late decomposition stage. Straw residue at middle decomposition stage was associated with greater cbhI and GH48 abundance and was followed by stronger β-glucosidase, β-cellobiohydrolase and β-xylosidase activities. Although enzyme activities and cellulolytic gene abundances were enhanced by 180 and 270 kg N ha-1 application, microbial communities and metabolic capability associated with rice straw were grouped by sampling time rather than specific fertilizer treatments. Thus, we recommended 180 kg N ha-1 application should be the economical rate for the current 6000 kg ha-1 rice straw returning.
| S-EPMC5789828 | biostudies-literature