Browse
Submit Data
Databases
API
Help

Dataset Information

35 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Draft Genome Sequence of the Aquatic Fungus Margaritispora aquatica Strain NNIBRFG339.

ABSTRACT: Margaritispora aquatica is an aquatic fungal species found in leaf litter. Here, we report the 42.5-Mb draft genome sequence of M. aquatica strain NNIBRFG339, which comprises 61 scaffolds and has an overall G+C content of 45.77% and an N 50 value of 1.856?Mb.

SUBMITTER: Goh J

PROVIDER: S-EPMC6838613 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Draft Genome Sequence of the Aquatic Fungus Margaritispora aquatica Strain NNIBRFG339.

Goh Jaeduk J Mun Hye Yeon HY Park Young-Hwan YH Park Sangkyu S Oh Yoosun Y Chung Namil N

Microbiology resource announcements 20191107 45

Margaritispora aquatica is an aquatic fungal species found in leaf litter. Here, we report the 42.5-Mb draft genome sequence of M. aquatica strain NNIBRFG339, which comprises 61 scaffolds and has an overall G+C content of 45.77% and an N 50 value of 1.856 Mb. ...[more]

PMID: 31699755

Similar Datasets

Draft Genome Sequence of the Aquatic Fungus Hymenoscyphus tetracladius Strain NNIBRFG329.

Project description:Hymenoscyphus tetracladius (anamorph, Articulospora tetracladia) is a common aquatic hyphomycetous fungus. Here, we report the draft genome sequence of H. tetracladius strain NNIBRFG329, which comprises 41.8 Mb in 20 scaffolds with an overall G+C content of 46.95% and an N50 value of 3.973 Mb.

| S-EPMC6284723 | biostudies-literature

Draft Genome Sequence of Fungus Clonostachys rosea Strain YKD0085.

Project description:Here, we report the draft genome sequence of Clonostachys rosea (strain YKD0085). The functional annotation of C. rosea provides important information related to its ability to produce secondary metabolites. The genome sequence presented here builds the basis for further genome mining.

| S-EPMC4919396 | biostudies-literature

Draft Genome Sequence of the Bacterium Comamonas aquatica CJG.

Project description:A Gram-negative bacterial strain, Comamonas aquatica CJG, absorbs low-density lipoprotein but not high-density lipoprotein in serum. Here, we report its draft genomic sequence of 3,764,434 bp, containing total 3,425 genes, 27% of which encode proteins for metabolism and energy conversion, and it is 30% identical to the genome of Comamonas testosteroni.

| S-EPMC5095463 | biostudies-literature

Draft Genome Sequence of Lichen-Forming Fungus Caloplaca flavorubescens Strain KoLRI002931.

Project description:Here we report a draft genome sequence of Caloplaca flavorubescens strain KoLRI002931, isolated from the bark of a gingko tree at Mt. Deogyu, Muju, South Korea. The genome sequence is 34,455,815 bp, with a GC content of 41.89%, consisting of 36 scaffolds.

| S-EPMC3757454 | biostudies-literature

Draft Genome Sequence of Lichen-Forming Fungus Cladonia metacorallifera Strain KoLRI002260.

Project description:The lichen-forming fungus Cladonia metacorallifera strain KoLRI002260 is capable of producing a number of secondary metabolites, including usnic, didymic, and squamatic acids, which have antitumor, antioxidant, and antibiotic activities. The draft genome assembly has a size of 36,682,060 bp, with a G+C content of 44.91%, and consists of 30 scaffolds.

| S-EPMC3924382 | biostudies-literature

Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride.

Project description:An unknown fungus has been isolated as a contaminant of in vitro-grown fungal cultures. In an attempt to identify the contamination, we isolated the causal agent and performed whole-genome sequencing. BLAST analysis of the internal transcribed spacer (ITS) sequence against the NCBI database showed 100% identity to Trichoderma atroviride, and further alignment of the genome assembly confirmed the unknown fungus to be T. atroviride. Here, we report the draft genome sequence of a T. atroviride strain.

| S-EPMC4424285 | biostudies-literature

Draft Genome Sequence of the Decomposition Fungus Aquanectria penicillioides Strain NNIBRFG19.

Project description:Aquanectria penicillioides is a common aquatic fungal species. Here, we report the 53.7-Mb draft genome sequence of A. penicillioides strain NNIBRFG19, which has an overall G+C content of 47.93%, comprising 13 scaffolds with an N50 value of 4.932 Mb.

| S-EPMC6328652 | biostudies-literature

Draft Genome Sequence of the Lichen-Forming Fungus Ramalina intermedia Strain YAF0013.

Project description:Here, we report a draft genome sequence of Ramalina intermedia strain YAF0013. The functional annotation of R. intermedia provides important information related to its ability to produce secondary metabolites. The genome sequence reported here builds the basis for further genome mining.

| S-EPMC5992360 | biostudies-literature

Draft Genome Sequence of the Griseofulvin-Producing Fungus Xylaria flabelliformis Strain G536.

Project description:The draft genome of the ascomycete fungus Xylaria flabelliformis (previously known as Xylaria cubensis) was sequenced using Illumina paired-end technology. The assembled genome is 41.2 Mb long and contains 11,404 genes. This genome will contribute to our understanding of X. flabelliformis secondary metabolism and the organism's ability to live as a decomposer as well as an endosymbiont.

| S-EPMC6753274 | biostudies-literature

Draft genome sequence of the basidiomycetous fungus Tinctoporellus epimiltinus strain RS1.

Project description:Members of the genus Tinctoporellus, which belong to the wood-degrading basidiomycetes, possess the ability to synthesize an array of industrially potent enzymes and metabolites. Here, we present the draft genome sequence of the species Tinctoporellus epimiltinus strain RS1, which is the first to represent its genus. The genome was sequenced using Illumina's 2 × 150 bp paired-end Nextera protocol. The draft genome assembly was 46.2 Mb in size consisting of 13,791 protein coding genes. Identification of carbohydrate active enzymes and laccases from the data may be useful in order to harness the metabolic potentials of the fungi. The data can be accessed at ENA under the accession number FTLJ00000000.

| S-EPMC6660550 | biostudies-literature