Dataset Information

Simple framework for constructing functional spiking recurrent neural networks.

ABSTRACT: Cortical microcircuits exhibit complex recurrent architectures that possess dynamically rich properties. The neurons that make up these microcircuits communicate mainly via discrete spikes, and it is not clear how spikes give rise to dynamics that can be used to perform computationally challenging tasks. In contrast, continuous models of rate-coding neurons can be trained to perform complex tasks. Here, we present a simple framework to construct biologically realistic spiking recurrent neural networks (RNNs) capable of learning a wide range of tasks. Our framework involves training a continuous-variable rate RNN with important biophysical constraints and transferring the learned dynamics and constraints to a spiking RNN in a one-to-one manner. The proposed framework introduces only 1 additional parameter to establish the equivalence between rate and spiking RNN models. We also study other model parameters related to the rate and spiking networks to optimize the one-to-one mapping. By establishing a close relationship between rate and spiking models, we demonstrate that spiking RNNs could be constructed to achieve similar performance as their counterpart continuous rate networks.

SUBMITTER: Kim R

PROVIDER: S-EPMC6842655 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

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Publications

Simple framework for constructing functional spiking recurrent neural networks.

Kim Robert R Li Yinghao Y Sejnowski Terrence J TJ

Proceedings of the National Academy of Sciences of the United States of America 20191021 45

Cortical microcircuits exhibit complex recurrent architectures that possess dynamically rich properties. The neurons that make up these microcircuits communicate mainly via discrete spikes, and it is not clear how spikes give rise to dynamics that can be used to perform computationally challenging tasks. In contrast, continuous models of rate-coding neurons can be trained to perform complex tasks. Here, we present a simple framework to construct biologically realistic spiking recurrent neural ne ...[more]

PMID: 31636215

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Project description:The ability to simultaneously record from large numbers of neurons in behaving animals has ushered in a new era for the study of the neural circuit mechanisms underlying cognitive functions. One promising approach to uncovering the dynamical and computational principles governing population responses is to analyze model recurrent neural networks (RNNs) that have been optimized to perform the same tasks as behaving animals. Because the optimization of network parameters specifies the desired output but not the manner in which to achieve this output, "trained" networks serve as a source of mechanistic hypotheses and a testing ground for data analyses that link neural computation to behavior. Complete access to the activity and connectivity of the circuit, and the ability to manipulate them arbitrarily, make trained networks a convenient proxy for biological circuits and a valuable platform for theoretical investigation. However, existing RNNs lack basic biological features such as the distinction between excitatory and inhibitory units (Dale's principle), which are essential if RNNs are to provide insights into the operation of biological circuits. Moreover, trained networks can achieve the same behavioral performance but differ substantially in their structure and dynamics, highlighting the need for a simple and flexible framework for the exploratory training of RNNs. Here, we describe a framework for gradient descent-based training of excitatory-inhibitory RNNs that can incorporate a variety of biological knowledge. We provide an implementation based on the machine learning library Theano, whose automatic differentiation capabilities facilitate modifications and extensions. We validate this framework by applying it to well-known experimental paradigms such as perceptual decision-making, context-dependent integration, multisensory integration, parametric working memory, and motor sequence generation. Our results demonstrate the wide range of neural activity patterns and behavior that can be modeled, and suggest a unified setting in which diverse cognitive computations and mechanisms can be studied.

Dataset Information

Simple framework for constructing functional spiking recurrent neural networks.

Publications

Simple framework for constructing functional spiking recurrent neural networks.

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