Unknown

Dataset Information

0

XitoSBML: A Modeling Tool for Creating Spatial Systems Biology Markup Language Models From Microscopic Images.


ABSTRACT: XitoSBML is a software tool designed to create an SBML (Systems Biology Markup Language) Level 3 Version 1 document from microscopic cellular images. It is implemented as an ImageJ plug-in and is designed to create spatial models that reflect the three-dimensional cellular geometry. With XitoSBML, users can perform spatial model simulations based on realistic cellular geometry by using SBML-supported software tools, including simulators such as Virtual Cell and Spatial Simulator. XitoSBML is open-source and is available at https://github.com/spatialsimulator/XitoSBML/. XitoSBML is confirmed to run on most 32/64-bit operating systems: Windows, MacOS, and Linux.

SUBMITTER: Ii K 

PROVIDER: S-EPMC6842926 | biostudies-literature |

REPOSITORIES: biostudies-literature

Similar Datasets

| S-EPMC2529325 | biostudies-literature
| S-EPMC5451324 | biostudies-other
| S-EPMC5457286 | biostudies-other
| S-EPMC3292844 | biostudies-literature
| S-EPMC9270329 | biostudies-literature
| S-EPMC3100435 | biostudies-literature
| S-EPMC6541252 | biostudies-literature
| S-EPMC5974206 | biostudies-literature
| S-EPMC8548738 | biostudies-literature
| S-EPMC3427305 | biostudies-literature