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WDSPdb: an updated resource for WD40 proteins.

ABSTRACT:

Summary

The WD40-repeat proteins are a large family of scaffold molecules that assemble complexes in various cellular processes. Obtaining their structures is the key to understanding their interaction details. We present WDSPdb 2.0, a significantly updated resource providing accurately predicted secondary and tertiary structures and featured sites annotations. Based on an optimized pipeline, WDSPdb 2.0 contains about 600 thousand entries, an increase of 10-fold, and integrates more than 37 000 variants from sources of ClinVar, Cosmic, 1000 Genomes, ExAC, IntOGen, cBioPortal and IntAct. In addition, the web site is largely improved for visualization, exploring and data downloading.

Availability and implementation

http://www.wdspdb.com/wdsp/ or http://wu.scbb.pkusz.edu.cn/wdsp/.

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Ma J

PROVIDER: S-EPMC6853709 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

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WDSPdb: an updated resource for WD40 proteins.

Ma Jing J An Ke K Zhou Jing-Bo JB Wu Nuo-Si NS Wang Yang Y Ye Zhi-Qiang ZQ Wu Yun-Dong YD

Bioinformatics (Oxford, England) 20191101 22

<h4>Summary</h4>The WD40-repeat proteins are a large family of scaffold molecules that assemble complexes in various cellular processes. Obtaining their structures is the key to understanding their interaction details. We present WDSPdb 2.0, a significantly updated resource providing accurately predicted secondary and tertiary structures and featured sites annotations. Based on an optimized pipeline, WDSPdb 2.0 contains about 600 thousand entries, an increase of 10-fold, and integrates more than ...[more]

PMID: 31161214

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