Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere.

ABSTRACT: Terriglobus albidus strain ORNL is a heterotrophic soil acidobacterium isolated from the rhizosphere of an Eastern cottonwood tree (Populus deltoides) in Tennessee. Its 6.4-Mb chromosome was completely sequenced using PacBio long reads, and it encodes 5,010 proteins and 53 RNAs.

SUBMITTER: Podar M

PROVIDER: S-EPMC6856270 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere.

Podar Mircea M Turner Joel J Burdick Leah H LH Pelletier Dale A DA

Microbiology resource announcements 20191114 46

Terriglobus albidus strain ORNL is a heterotrophic soil acidobacterium isolated from the rhizosphere of an Eastern cottonwood tree (Populus deltoides) in Tennessee. Its 6.4-Mb chromosome was completely sequenced using PacBio long reads, and it encodes 5,010 proteins and 53 RNAs. ...[more]

PMID: 31727704

Similar Datasets

Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.

Project description:Roseimicrobium sp. strain ORNL1 is a soil bacterium that belongs to the phylum Verrucomicrobia and was isolated from the rhizosphere of a forest Eastern cottonwood tree, Populus deltoides, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.

| S-EPMC7330248 | biostudies-literature

Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides.

Project description:Starkeya sp. strain ORNL1 is an alphaproteobacterium isolated from the rhizosphere of an Eastern cottonwood tree. Starkeya spp. are physiologically versatile, using a wide range of nutritional and energetic resources and serving important ecological roles in carbon and sulfur cycling. The 6.3-Mb chromosome of Starkeya sp. strain ORNL1 was completely sequenced and will help in understanding nutrient cycles.

| S-EPMC7330251 | biostudies-literature

Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots.

Project description:Larkinella sp. strain BK230, a heterotrophic bacterium of the phylum Bacteroidetes, was isolated from the roots of a field-grown eastern cottonwood tree (Populus deltoides) located in Georgia. The draft 7.27-Mb genome has a G+C content of 53.4% and contains 6,026 coding sequences, including 41 tRNA genes.

| S-EPMC7082457 | biostudies-literature

Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

Project description:Rhizobium sp. strain PDO1-076 is a plant-associated bacterium isolated from Populus deltoides, and its draft genome sequence is reported.

| S-EPMC3347069 | biostudies-literature

First Complete Genome Sequence of a Subdivision 6 Acidobacterium Strain.

Project description:Although ubiquitous and abundant in soils, acidobacteria have mostly escaped isolation and remain poorly investigated. Only a few cultured representatives and just eight genomes of subdivisions 1, 3, and 4 are available to date. Here, we determined the complete genome sequence of strain HEG_-6_39, the first genome of Acidobacterium subdivision 6.

| S-EPMC4882960 | biostudies-literature

The complete chloroplast genome sequence of Populus deltoides 'Siyang-2'.

Project description:Populus deltoides 'Siyang-2' is an improved variety of forest trees that have been identified recently. It shows superior growth performance compared to other local cultivars in the region of Yangtze-Huaihe in China. In this study, the whole chloroplast (cp) genome sequence of 'Siyang-2' was assembled and characterized by high-throughput sequencing data. The complete cp genome was 156,957 bp in length, containing a large single-copy region (LSC) of 85,096 bp, and a small single-copy region (SSC) of 16,563 bp, which were separated by a pair of 27,649 bp inverted repeat regions (IRs). The cp genome contained 131 genes, including 86 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. Most of the gene species occur as a single copy, while 20 gene species occur in double copies. The overall GC content of 'Siyang-2' cp genome is 34.6%, while the corresponding values of the LSC, SSC, and IR regions are 34.5%, 30.6%, 41.9%, respectively. The complete cp genome provides valuable phylogenetic and cp genetic engineering studies of this important improved poplar species P. deltoides 'Siyang-2'.

| S-EPMC7748702 | biostudies-literature

Complete chloroplast genome sequence and phylogenetic analysis of Populus deltoides Caihong.

Project description:Colored-leaf plants are increasingly popular, which has higher ecological, economic and social benefits. Caihong poplar, one of colored-leaf plants from Populus deltoides, has been widely used in courtyard embellishment, road greening, garden set King and so on. In this study, the complete chloroplast genome of Caihong poplar was evaluated, and the total chloroplast genome size of which is 156,957 bp in length with 36.69% GC content, including large single-copy region (LSC) of 85,096 bp, a pair of inverted repeat regions (IRs) of 27,649 bp each, and a small single-copy region (SSC) of 16,563 bp. There were 22 tRNA genes, 83 protein-coding genes, and four rRNA genes. The phylogenetic analysis with 22 species indicated that Caihong poplar was closely clustered with Populus deltoides Zhonglin 2025. In conclusion, the complete chloroplast genomes of Caihong poplar in this study provided valuable genomic resources for further phylogeny and species identification in the Populus family.

| S-EPMC7872566 | biostudies-literature

Complete Genome Sequence of Pseudomonas sp. Strain SK, Isolated from Organic Wheat Rhizosphere.

Project description:Here, we report the annotated whole-genome sequence of Pseudomonas sp. strain SK, isolated in India from organic wheat rhizosphere. This strain has proved to be a species with potential biocontrol activity against soilborne plant pathogens based on antiSMASH analysis.

| S-EPMC7317103 | biostudies-literature

Complete Genome Sequence of Exiguobacterium sp. Strain MH3, Isolated from Rhizosphere of Lemna minor.

Project description:We report the complete genome sequence of Exiguobacterium sp. strain MH3, isolated from the rhizosphere of duckweed. The genome assembly is 3.16 Mb, with a G+C content of 47.24%, and it may provide useful information about plant-microbe interactions and the genetic basis for the tolerance of the strain to various environmental stresses.

| S-EPMC3868855 | biostudies-literature

Complete Genome Sequence of Rhizobium sp. Strain 11515TR, Isolated from Tomato Rhizosphere in the Philippines.

Project description:Rhizobium sp. strain 11515TR was isolated from the rhizosphere of tomato in Laguna, Philippines. The 7.07-Mb complete genome comprises three replicons, one chromosome, and two plasmids, with a G+C content of 59.4% and 6,720 protein-coding genes. The genome encodes gene clusters supporting rhizosphere processes, plant symbiosis, and secondary bioactive metabolites.

| S-EPMC6256449 | biostudies-literature