Dataset Information

Cross-species validation of human specific STR system, SureID® 21G and SureID® 23comp (Health Gene Technologies) in Chimpanzee (Pan Troglodytes).

ABSTRACT: OBJECTIVES:The human specific commercially available STRs system are often not tested in non human primates for their cross applicability. The aim of this study is to test Cross-species validation of two commercially available human specific STR kits i.e. SureID® 21G and SureID® 23comp (Health Gene Technologies) for their positive application in Chimpanzee (Pan troglodytes). RESULT:In SureID® 21G, 19 loci amplified and while 20 loci amplified in SureID® 23comp. All the amplified loci in both STR kits were found polymorphic and the locus Amelogenin showed differential banding patterns between male and female revealing their known gender. The present study validates the applicability of these human specific STR kits in Chimpanzee that can be used in forensics analysis, paternity testing and population genetic studies.

SUBMITTER: Singh A

PROVIDER: S-EPMC6862757 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

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Cross-species validation of human specific STR system, SureID<sup>®</sup> 21G and SureID<sup>®</sup> 23comp (Health Gene Technologies) in Chimpanzee (Pan Troglodytes).

Singh Abhishek A Thakur Mukesh M Sahajpal Vivek V Singh Sujeet K SK Chandra Kailash K Sharma Arun A Devi Nisha N Bernot Ausma A

BMC research notes 20191119 1

<h4>Objectives</h4>The human specific commercially available STRs system are often not tested in non human primates for their cross applicability. The aim of this study is to test Cross-species validation of two commercially available human specific STR kits i.e. SureID<sup>®</sup> 21G and SureID<sup>®</sup> 23comp (Health Gene Technologies) for their positive application in Chimpanzee (Pan troglodytes).<h4>Result</h4>In SureID<sup>®</sup> 21G, 19 loci amplified and while 20 loci amplified in Su ...[more]

PMID: 31744541

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Project description:Across vertebrates, species with intense male mating competition and high levels of sexual dimorphism in body size generally exhibit dimorphism in age-specific fertility. Compared with females, males show later ages at first reproduction and earlier reproductive senescence because they take longer to attain adult body size and musculature, and maintain peak condition for a limited time. This normally yields a shorter male duration of effective breeding, but this reduction might be attenuated in species that frequently use coalitionary aggression. Here, we present comparative genetic and demographic data on chimpanzees from three long-term study communities (Kanyawara: Kibale National Park, Uganda; Mitumba and Kasekela: Gombe National Park, Tanzania), comprising 581 male risk years and 112 infants, to characterize male age-specific fertility. For comparison, we update estimates from female chimpanzees in the same sites and append a sample of human foragers (the Tanzanian Hadza). Consistent with the idea that aggressive mating competition favors youth, chimpanzee males attained a higher maximum fertility than females, followed by a steeper decline with age. Males did not show a delay in reproduction compared with females, however, as adolescents in both sites successfully reproduced by targeting young, subfecund females, who were less attractive to adults. Gombe males showed earlier reproductive senescence and a shorter duration of effective breeding than Gombe females. By contrast, older males in Kanyawara generally continued to reproduce, apparently by forming coalitions with the alpha. Hadza foragers showed a distinct pattern of sexual dimorphism in age-specific fertility as, compared with women, men gained conceptions later but continued reproducing longer. In sum, both humans and chimpanzees showed sexual dimorphism in age-specific fertility that deviated from predictions drawn from primates with more extreme body size dimorphism, suggesting altered dynamics of male-male competition in the two lineages. In both species, coalitions appear important for extending male reproductive careers.

Project description:Voluntary participation in behavioural studies offers several scientific, management, and welfare benefits to non-human primates (NHPs). Aside from the scientific benefit of increased understanding of NHP cognition, sociality, and behaviour derived from noninvasive behavioural studies, participation itself has the potential to provide functional simulations of natural behaviours, enrichment opportunities, and increased control over the captive environment, all of which enhance welfare. Despite a developing consensus that voluntary participation offers these welfare enhancements, little research has empirically investigated the ways that participation in behavioural studies may affect welfare. In the current study, we investigated potential relationships between captive chimpanzee welfare and long-term, repeated voluntary participation in noninvasive behavioural studies. We collected behavioural data on 118 chimpanzees at the National Center for Chimpanzee Care (NCCC) in Bastrop, Texas, USA between 2016 and 2018 using 15-minute focal animal samples. Additionally, we collected information on 41 behavioural studies conducted between 2010 and 2018 with the NCCC chimpanzees that involved exposure to a stimulus or manipulation. The total number of behavioural studies in which chimpanzees had participated over the approximately eight-year period was then examined in relation to levels of behavioural diversity, abnormal behaviour, rough scratching, inactivity, and locomotion using a series of regression analyses that controlled for rearing status and age of the chimpanzee at the time of data collection. Analyses revealed significant, positive relationships between the total number of studies in which chimpanzees participated and 1) behavioural diversity scores, R2 adj = .21, F(3,114) = 11.25, p < 0.001; and 2) rough scratching, R2 adj = .11, F(3,114) = 6.01, p = 0.001. The positive relationship between behavioural diversity scores and the total number of studies in which chimpanzees participated seems unsurprising, although we cannot draw conclusions about the directionality of this relationship. The result that rough scratching and the total number of studies in which chimpanzees participated were positively correlated is unexpected. However, rough scratching made up less than 1% of all activity in the current study, and as such, this result may not be biologically meaningful. These findings suggest that participation in behavioural studies is not likely to be detrimental to chimpanzee well-being, and may even be beneficial. Data such as these, which empirically investigate existing recommendations can help inform decisions pertaining to the participation of chimpanzees in behavioural research.

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Dataset Information

Cross-species validation of human specific STR system, SureID® 21G and SureID® 23comp (Health Gene Technologies) in Chimpanzee (Pan Troglodytes).

Publications

Cross-species validation of human specific STR system, SureID<sup>®</sup> 21G and SureID<sup>®</sup> 23comp (Health Gene Technologies) in Chimpanzee (Pan Troglodytes).

Similar Datasets

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