Dataset Information

Genetic diversity and differentiation of Daphnia galeata in the middle and lower reaches of the Yangtze River, China.

ABSTRACT: Mitochondrial 16S rDNA and CO I gene were used as molecular markers for the analysis of the genetic diversity and differentiation of Daphnia galeata populations in nine water bodies in the middle and lower reaches of the Yangtze River. In the combined 16S rDNA and CO I gene sequences, 54 variable sites and 44 haplotypes were observed among 219 individuals belonging to nine D. galeata populations. Average haplotype diversity and nucleotide diversity were, respectively, 0.72% and 0.56%. The F-statistics (F ST) value of the D. galeata populations was 0.149. According to the results of the neutral test, D. galeata in the middle and lower reaches of the Yangtze River had experienced a bottleneck effect in the history. Molecular variance analysis indicated that the genetic differentiation of the D. galeata populations mainly occurred within populations (85.09%). Greater genetic differentiations of D. galeata among individuals within populations appeared in the populations from the Huaihe River basin, whereas smaller genetic differentiations occurred in the populations from the middle reaches of the Yangtze River. Strong gene flows were all observed between Group I (four populations from the middle reaches of the Yangtze River) and Group ?? (three populations from the middle and lower reaches of the Yangtze River), and Group ??? (two populations from the Huaihe River basin). The effective migration rates (M) were 851.49 from Group I to Group ?? and 685.96 from Group I to Group ???, respectively. However, no significant relationship was observed between the genetic differentiation and geographical distance of the nine populations (r = .137, p > .05). Results suggested that the genetic differentiation of D. galeata in the water bodies in the middle and lower reaches of the Yangtze River resulted mainly from geographical isolation.

SUBMITTER: Liu Q

PROVIDER: S-EPMC6875568 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

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Genetic diversity and differentiation of Daphnia galeata in the middle and lower reaches of the Yangtze River, China.

Liu Qi Q Deng Daogui D Zhang Kun K He Ping P Sun Yuchen Y Zhang Tingting T Yang Wei W Liu Wei W

Ecology and evolution 20191022 22

Mitochondrial 16S rDNA and CO I gene were used as molecular markers for the analysis of the genetic diversity and differentiation of Daphnia galeata populations in nine water bodies in the middle and lower reaches of the Yangtze River. In the combined 16S rDNA and CO I gene sequences, 54 variable sites and 44 haplotypes were observed among 219 individuals belonging to nine D. galeata populations. Average haplotype diversity and nucleotide diversity were, ...[more]

PMID: 31788207

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Dataset Information

Genetic diversity and differentiation of Daphnia galeata in the middle and lower reaches of the Yangtze River, China.

Publications

Genetic diversity and differentiation of <i>Daphnia galeata</i> in the middle and lower reaches of the Yangtze River, China.

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