Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.
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ABSTRACT:
SUBMITTER: Zhu Q
PROVIDER: S-EPMC6889312 | biostudies-literature | 2019 Dec
REPOSITORIES: biostudies-literature
Publications
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.
Zhu Qiyun Q Mai Uyen U Pfeiffer Wayne W Janssen Stefan S Asnicar Francesco F Sanders Jon G JG Belda-Ferre Pedro P Al-Ghalith Gabriel A GA Kopylova Evguenia E McDonald Daniel D Kosciolek Tomasz T Yin John B JB Huang Shi S Salam Nimaichand N Jiao Jian-Yu JY Wu Zijun Z Xu Zhenjiang Z ZZ Cantrell Kalen K Yang Yimeng Y Sayyari Erfan E Rabiee Maryam M Morton James T JT Podell Sheila S Knights Dan D Li Wen-Jun WJ Huttenhower Curtis C Segata Nicola N Smarr Larry L Mirarab Siavash S Knight Rob R
Nature communications 20191202 1
Rapid growth of genome data provides opportunities for updating microbial evolutionary relationships, but this is challenged by the discordant evolution of individual genes. Here we build a reference phylogeny of 10,575 evenly-sampled bacterial and archaeal genomes, based on a comprehensive set of 381 markers, using multiple strategies. Our trees indicate remarkably closer evolutionary proximity between Archaea and Bacteria than previous estimates that were limited to fewer "core" genes, such as ...[more]
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