Prediction of interresidue contacts with DeepMetaPSICOV in CASP13.
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ABSTRACT:
SUBMITTER: Kandathil SM
PROVIDER: S-EPMC6899903 | biostudies-literature | 2019 Dec
REPOSITORIES: biostudies-literature
Publications
Prediction of interresidue contacts with DeepMetaPSICOV in CASP13.
Kandathil Shaun M SM Greener Joe G JG Jones David T DT
Proteins 20190727 12
In this article, we describe our efforts in contact prediction in the CASP13 experiment. We employed a new deep learning-based contact prediction tool, DeepMetaPSICOV (or DMP for short), together with new methods and data sources for alignment generation. DMP evolved from MetaPSICOV and DeepCov and combines the input feature sets used by these methods as input to a deep, fully convolutional residual neural network. We also improved our method for multiple sequence alignment generation and includ ...[more]
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