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Quantum mechanics of proteins in explicit water: The role of plasmon-like solute-solvent interactions.

ABSTRACT: Quantum-mechanical van der Waals dispersion interactions play an essential role in intraprotein and protein-water interactions-the two main factors affecting the structure and dynamics of proteins in water. Typically, these interactions are only treated phenomenologically, via pairwise potential terms in classical force fields. Here, we use an explicit quantum-mechanical approach of density-functional tight-binding combined with the many-body dispersion formalism and demonstrate the relevance of many-body van der Waals forces both to protein energetics and to protein-water interactions. In contrast to commonly used pairwise approaches, many-body effects substantially decrease the relative stability of native states in the absence of water. Upon solvation, the protein-water dispersion interaction counteracts this effect and stabilizes native conformations and transition states. These observations arise from the highly delocalized and collective character of the interactions, suggesting a remarkable persistence of electron correlation through aqueous environments and providing the basis for long-range interaction mechanisms in biomolecular systems.

SUBMITTER: Stohr M

PROVIDER: S-EPMC6910842 | biostudies-literature | 2019 Dec

REPOSITORIES: biostudies-literature

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Quantum mechanics of proteins in explicit water: The role of plasmon-like solute-solvent interactions.

Stöhr Martin M Tkatchenko Alexandre A

Science advances 20191213 12

Quantum-mechanical van der Waals dispersion interactions play an essential role in intraprotein and protein-water interactions-the two main factors affecting the structure and dynamics of proteins in water. Typically, these interactions are only treated phenomenologically, via pairwise potential terms in classical force fields. Here, we use an explicit quantum-mechanical approach of density-functional tight-binding combined with the many-body dispersion formalism and demonstrate the relevance of ...[more]

PMID: 31853494

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Dataset Information

Quantum mechanics of proteins in explicit water: The role of plasmon-like solute-solvent interactions.

Publications

Quantum mechanics of proteins in explicit water: The role of plasmon-like solute-solvent interactions.

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