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DNA barcoding of the fire ant genus Solenopsis Westwood (Hymenoptera: Formicidae) from the Riyadh region, the Kingdom of Saudi Arabia.

ABSTRACT: The ant genus Solenopsis Westwood, 1840 is the largest in Myrmicinae subfamily having almost 200 described species worldwide. They are commonly distributed in the tropics and temperate areas of the world. Some invasive Solenopsis species are very dreadful. We have already reported a fire ant species, Solenopsis saudiensis Sharaf & Aldawood, 2011, identified using traditional morphometric approaches of species identification. Present study was carried out to develop DNA Barcoding to identify Solenopsis saudiensis and to elucidate genetic structure of the various S. saudiensis populations across their distribution range in Riyadh, Saudi Arabia. The comparison of DNA barcodes showed no genetic diversity among six populations and a queen from S. saudiensis analyzed from the Riyadh region. This genetic resemblance probably reflects their adaptation toward a specific habitat, thus constituting a single and strong gene pool. Our comprehensive field survey did not provide any evidence of Solenopsis species except S. saudiensis in the Riyadh region. Solenopsis saudiensis populations were only found around date palm trees indicating their strong association with date palm groves. Moreover, S. saudiensis has 83-86% sequence identity to other Solenopsis spp. from other parts of the world. Interestingly, the highest sequence identity of (86%) was with that of Solenopsis molesta Say, 1836, the thief ant, from the USA. This study provides a working laboratory procedure and a reference library for the identification of Solenopsis saudiensis.

SUBMITTER: Rasool KG

PROVIDER: S-EPMC6933196 | biostudies-literature | 2020 Jan

REPOSITORIES: biostudies-literature

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DNA barcoding of the fire ant genus Solenopsis Westwood (Hymenoptera: Formicidae) from the Riyadh region, the Kingdom of Saudi Arabia.

Rasool Khawaja Ghulam KG Husain Mureed M Salman Shehzad S Tufail Muhammad M Sukirno Sukirno S Aldawood Abdulrahman S AS

Saudi journal of biological sciences 20190702 1

The ant genus Solenopsis Westwood, 1840 is the largest in Myrmicinae subfamily having almost 200 described species worldwide. They are commonly distributed in the tropics and temperate areas of the world. Some invasive Solenopsis species are very dreadful. We have already reported a fire ant species, Solenopsis saudiensis Sharaf & Aldawood, 2011, identified using traditional morphometric approaches of species identification. Present study was carried out to develop DNA Barco ...[more]

PMID: 31889834

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Project description:BackgroundAdvances in sequencing and analysis tools have facilitated discovery of many new viruses from invertebrates, including ants. Solenopsis invicta is an invasive ant that has quickly spread worldwide causing significant ecological and economic impacts. Its virome has begun to be characterized pertaining to potential use of viruses as natural enemies. Although the S. invicta virome is the best characterized among ants, most studies have been performed in its native range, with less information from invaded areas.MethodsUsing a metatranscriptome approach, we further identified and molecularly characterized virus sequences associated with S. invicta, in two introduced areas, U.S and Taiwan. The data set used here was obtained from different stages (larvae, pupa, and adults) of S. invicta life cycle. Publicly available RNA sequences from GenBank's Sequence Read Archive were downloaded and de novo assembled using CLC Genomics Workbench 20.0.1. Contigs were compared against the non-redundant protein sequences and those showing similarity to viral sequences were further analyzed.ResultsWe characterized five putative new viruses associated with S. invicta transcriptomes. Sequence comparisons revealed extensive divergence across ORFs and genomic regions with most of them sharing less than 40% amino acid identity with those closest homologous sequences previously characterized. The first negative-sense single-stranded RNA virus genomic sequences included in the orders Bunyavirales and Mononegavirales are reported. In addition, two positive single-strand virus genome sequences and one single strand DNA virus genome sequence were also identified. While the presence of a putative tenuivirus associated with S. invicta was previously suggested to be a contamination, here we characterized and present strong evidence that Solenopsis invicta virus 14 (SINV-14) is a tenui-like virus that has a long-term association with the ant. Furthermore, based on virus sequence abundance compared to housekeeping genes, phylogenetic relationships, and completeness of viral coding sequences, our results suggest that four of five virus sequences reported, those being SINV-14, SINV-15, SINV-16 and SINV-17, may be associated to viruses actively replicating in the ant S. invicta.ConclusionsThe present study expands our knowledge about viral diversity associated with S. invicta in introduced areas with potential to be used as biological control agents, which will require further biological characterization.

Project description:Stenamma is a cryptic "leaf-litter" ant genus that occurs in mesic forest habitats throughout the Holarctic region, Central America, and part of northwestern South America (Colombia and Ecuador). The genus was thought to be restricted primarily to the temperate zone, but recent collecting efforts have uncovered a large radiation of Neotropical forms, which rival the Holarctic species in terms of morphological and behavioral diversity. By inferring a broad-scale molecular phylogeny of Stenamma, Branstetter (2012) showed that all Neotropical species belong to a diverse Middle American clade (MAC), and that this clade is sister to an almost completely geographically separated Holarctic clade (HOC). Here, the Middle American clade of Stenamma is revised to recognize 40 species, of which 33 are described as new. Included in the revision are a key to species based on the worker caste, and for each species where possible, descriptions and images of workers and queens, images of males, information on geographic distribution, descriptions of intraspecific variation, and notes on natural history. Several species groups are defined, but the majority of species remain unassigned due to a lack of diagnostic morphological character states for most molecular clades. The following species are redescribed: Stenamma alas Longino, Stenamma diversum Mann, Stenamma expolitum Smith, Stenamma felixi Mann, Stenamma huachucanum Smith, Stenamma manni Wheeler, and Stenamma schmidti Menozzi. The following are described as new: Stenamma andersoni sp. n., Stenamma atribellum sp. n., Stenamma brujita sp. n., Stenamma callipygium sp. n., Stenamma catracho sp. n., Stenamma connectum sp. n., Stenamma crypticum sp. n., Stenamma cusuco sp. n., Stenamma excisum sp. n., Stenamma expolitico sp. n., Stenamma hojarasca sp. n., Stenamma ignotum sp. n., Stenamma lagunum sp. n., Stenamma llama sp. n., Stenamma leptospinum sp. n., Stenamma lobinodus sp. n., Stenamma longinoi sp. n., Stenamma maximon sp. n., Stenamma megamanni sp. n., Stenamma monstrosum sp. n., Stenamma muralla sp. n., Stenamma nanozoi sp. n., Stenamma nonotch sp. n., Stenamma ochrocnemis sp. n., Stenamma pelophilum sp. n., Stenamma picopicucha sp. n., Stenamma saenzae sp. n., Stenamma sandinista sp. n., Stenamma stictosomum sp. n., Stenamma tiburon sp. n., Stenamma tico sp. n., Stenamma vexator sp. n., and Stenamma zelum sp. n. Although many of the newly defined species consist of challenging species complexes, this study establishes a robust baseline that will guide future work on the systematics of MAC Stenamma. The total global diversity of Stenamma now includes 84 extant species.

Dataset Information

DNA barcoding of the fire ant genus Solenopsis Westwood (Hymenoptera: Formicidae) from the Riyadh region, the Kingdom of Saudi Arabia.

Publications

DNA barcoding of the fire ant genus <i>Solenopsis</i> Westwood (Hymenoptera: Formicidae) from the Riyadh region, the Kingdom of Saudi Arabia.

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