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A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex.


ABSTRACT: To understand how the brain processes sensory information to guide behavior, we must know how stimulus representations are transformed throughout the visual cortex. Here we report an open, large-scale physiological survey of activity in the awake mouse visual cortex: the Allen Brain Observatory Visual Coding dataset. This publicly available dataset includes the cortical activity of nearly 60,000 neurons from six visual areas, four layers, and 12 transgenic mouse lines in a total of 243 adult mice, in response to a systematic set of visual stimuli. We classify neurons on the basis of joint reliabilities to multiple stimuli and validate this functional classification with models of visual responses. While most classes are characterized by responses to specific subsets of the stimuli, the largest class is not reliably responsive to any of the stimuli and becomes progressively larger in higher visual areas. These classes reveal a functional organization wherein putative dorsal areas show specialization for visual motion signals.

SUBMITTER: de Vries SEJ 

PROVIDER: S-EPMC6948932 | biostudies-literature | 2020 Jan

REPOSITORIES: biostudies-literature

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A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex.

de Vries Saskia E J SEJ   Lecoq Jerome A JA   Buice Michael A MA   Groblewski Peter A PA   Ocker Gabriel K GK   Oliver Michael M   Feng David D   Cain Nicholas N   Ledochowitsch Peter P   Millman Daniel D   Roll Kate K   Garrett Marina M   Keenan Tom T   Kuan Leonard L   Mihalas Stefan S   Olsen Shawn S   Thompson Carol C   Wakeman Wayne W   Waters Jack J   Williams Derric D   Barber Chris C   Berbesque Nathan N   Blanchard Brandon B   Bowles Nicholas N   Caldejon Shiella D SD   Casal Linzy L   Cho Andrew A   Cross Sissy S   Dang Chinh C   Dolbeare Tim T   Edwards Melise M   Galbraith John J   Gaudreault Nathalie N   Gilbert Terri L TL   Griffin Fiona F   Hargrave Perry P   Howard Robert R   Huang Lawrence L   Jewell Sean S   Keller Nika N   Knoblich Ulf U   Larkin Josh D JD   Larsen Rachael R   Lau Chris C   Lee Eric E   Lee Felix F   Leon Arielle A   Li Lu L   Long Fuhui F   Luviano Jennifer J   Mace Kyla K   Nguyen Thuyanh T   Perkins Jed J   Robertson Miranda M   Seid Sam S   Shea-Brown Eric E   Shi Jianghong J   Sjoquist Nathan N   Slaughterbeck Cliff C   Sullivan David D   Valenza Ryan R   White Casey C   Williford Ali A   Witten Daniela M DM   Zhuang Jun J   Zeng Hongkui H   Farrell Colin C   Ng Lydia L   Bernard Amy A   Phillips John W JW   Reid R Clay RC   Koch Christof C  

Nature neuroscience 20191216 1


To understand how the brain processes sensory information to guide behavior, we must know how stimulus representations are transformed throughout the visual cortex. Here we report an open, large-scale physiological survey of activity in the awake mouse visual cortex: the Allen Brain Observatory Visual Coding dataset. This publicly available dataset includes the cortical activity of nearly 60,000 neurons from six visual areas, four layers, and 12 transgenic mouse lines in a total of 243 adult mic  ...[more]

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