Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Passive water ascent in a tall, scalable synthetic tree.

ABSTRACT: The transpiration cycle in trees is powered by a negative water potential generated within the leaves, which pumps water up a dense array of xylem conduits. Synthetic trees can mimic this transpiration cycle, but have been confined to pumping water across a single microcapillary or microfluidic channels. Here, we fabricated tall synthetic trees where water ascends up an array of large diameter conduits, to enable transpiration at the same macroscopic scale as natural trees. An array of 19 tubes of millimetric diameter were embedded inside of a nanoporous ceramic disk on one end, while their free end was submerged in a water reservoir. After saturating the synthetic tree by boiling it underwater, water can flow continuously up the tubes even when the ceramic disk was elevated over 3?m above the reservoir. A theory is developed to reveal two distinct modes of transpiration: an evaporation-limited regime and a flow-limited regime.

SUBMITTER: Shi W

PROVIDER: S-EPMC6959229 | biostudies-literature | 2020 Jan

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Passive water ascent in a tall, scalable synthetic tree.

Shi Weiwei W Dalrymple Richard M RM McKenny Collin J CJ Morrow David S DS Rashed Ziad T ZT Surinach Daniel A DA Boreyko Jonathan B JB

Scientific reports 20200114 1

The transpiration cycle in trees is powered by a negative water potential generated within the leaves, which pumps water up a dense array of xylem conduits. Synthetic trees can mimic this transpiration cycle, but have been confined to pumping water across a single microcapillary or microfluidic channels. Here, we fabricated tall synthetic trees where water ascends up an array of large diameter conduits, to enable transpiration at the same macroscopic scale as natural trees. An array of 19 tubes ...[more]

PMID: 31937824

Similar Datasets

Water Adsorption to Leaves of Tall Cryptomeria japonica Tree Analyzed by Infrared Spectroscopy under Relative Humidity Control.

Project description:Leaf water storage is a complex interaction between live tissue properties (anatomy and physiology) and physicochemical properties of biomolecules and water. How leaves adsorb water molecules based on interactions between biomolecules and water, including hydrogen bonding, challenges our understanding of hydraulic acclimation in tall trees where leaves are exposed to more water stress. Here, we used infrared (IR) microspectroscopy with changing relative humidity (RH) on leaves of tall Cryptomeria japonica trees. OH band areas correlating with water content were larger for treetop (52 m) than for lower-crown (19 m) leaves, regardless of relative humidity (RH). This high water adsorption in treetop leaves was not explained by polysaccharides such as Ca-bridged pectin, but could be attributed to the greater cross-sectional area of the transfusion tissue. In both treetop and lower-crown leaves, the band areas of long (free water: around 3550 cm-1) and short (bound water: around 3200 cm-1) hydrogen bonding OH components showed similar increases with increasing RH, while the band area of free water was larger at the treetop leaves regardless of RH. Free water molecules with longer H bonds were considered to be adsorbed loosely to hydrophobic CH surfaces of polysaccharides in the leaf-cross sections.

| S-EPMC7569789 | biostudies-literature

Tall fescue endophyte effects on tolerance to water-deficit stress.

Project description:BackgroundThe endophytic fungus, Neotyphodium coenophialum, can enhance drought tolerance of its host grass, tall fescue. To investigate endophyte effects on plant responses to acute water deficit stress, we did comprehensive profiling of plant metabolite levels in both shoot and root tissues of genetically identical clone pairs of tall fescue with endophyte (E+) and without endophyte (E-) in response to direct water deficit stress. The E- clones were generated by treating E+ plants with fungicide and selectively propagating single tillers. In time course studies on the E+ and E- clones, water was withheld from 0 to 5 days, during which levels of free sugars, sugar alcohols, and amino acids were determined, as were levels of some major fungal metabolites.ResultsAfter 2-3 days of withholding water, survival and tillering of re-watered plants was significantly greater for E+ than E- clones. Within two to three days of withholding water, significant endophyte effects on metabolites manifested as higher levels of free glucose, fructose, trehalose, sugar alcohols, proline and glutamic acid in shoots and roots. The fungal metabolites, mannitol and loline alkaloids, also significantly increased with water deficit.ConclusionsOur results suggest that symbiotic N. coenophialum aids in survival and recovery of tall fescue plants from water deficit, and acts in part by inducing rapid accumulation of these compatible solutes soon after imposition of stress.

| S-EPMC3848598 | biostudies-literature

Scalable Hybrid Synthetic/Biocatalytic Route to Psilocybin.

Project description:Psilocybin, the principal indole alkaloid of Psilocybe mushrooms, is currently undergoing clinical trials as a medication against treatment-resistant depression and major depressive disorder. The psilocybin supply for pharmaceutical purposes is met by synthetic chemistry. We replaced the problematic phosphorylation step during synthesis with the mushroom kinase PsiK. This enzyme was biochemically characterized and used to produce one gram of psilocybin from psilocin within 20 minutes. We also describe a pilot-scale protocol for recombinant PsiK that yielded 150?mg enzyme in active and soluble form. Our work consolidates the simplicity of tryptamine chemistry with the specificity and selectivity of enzymatic catalysis and helps provide access to an important drug at potentially reasonable cost.

| S-EPMC7383583 | biostudies-literature

A simple, scalable synthetic route to (+)- and (-)-pseudoephenamine.

Project description:A three-step synthesis of pseudoephenamine suitable for preparing multigram amounts of both enantiomers of the auxiliary from the inexpensive starting material benzil is described. The sequence involves synthesis of the crystalline monomethylimine derivative of benzil, reduction of that substance with lithium aluminum hydride, and resolution of pseudoephenamine with mandelic acid.

| S-EPMC3864801 | biostudies-literature

Authorship Correction: Scalable Passive Sleep Monitoring Using Mobile Phones: Opportunities and Obstacles.

Project description:[This corrects the article DOI: 10.2196/jmir.6821.].

| S-EPMC6304214 | biostudies-literature

Pinene-Based Oxidative Synthetic Toolbox for Scalable Polyester Synthesis.

Project description:Generation of renewable polymers is a long-standing goal toward reaching a more sustainable society, but building blocks in biomass can be incompatible with desired polymerization type, hampering the full implementation potential of biomaterials. Herein, we show how conceptually simple oxidative transformations can be used to unlock the inherent reactivity of terpene synthons in generating polyesters by two different mechanisms starting from the same α-pinene substrate. In the first pathway, α-pinene was oxidized into the bicyclic verbanone-based lactone and subsequently polymerized into star-shaped polymers via ring-opening polymerization, resulting in a biobased semicrystalline polyester with tunable glass transition and melting temperatures. In a second pathway, polyesters were synthesized via polycondensation, utilizing the diol 1-(1'-hydroxyethyl)-3-(2'-hydroxy-ethyl)-2,2-dimethylcyclobutane (HHDC) synthesized by oxidative cleavage of the double bond of α-pinene, together with unsaturated biobased diesters such as dimethyl maleate (DMM) and dimethyl itaconate (DMI). The resulting families of terpene-based polyesters were thereafter successfully cross-linked by either transetherification, utilizing the terminal hydroxyl groups of the synthesized verbanone-based materials, or by UV irradiation, utilizing the unsaturation provided by the DMM or DMI moieties within the HHDC-based copolymers. This work highlights the potential to apply an oxidative toolbox to valorize inert terpene metabolites enabling generation of biosourced polyesters and coatings thereof by complementary mechanisms.

| S-EPMC8620555 | biostudies-literature

Morpho-physiological responses of tall wheatgrass populations to different levels of water stress.

Project description:Tall wheatgrass [Elymus elongatus subsp. ponticus (Podp.) Melderis] is a perennial forage grass cultivated in dry, saline or alkaline environments. The morpho-physiological characteristics of four populations of tall wheatgrass from different climatic-edaphic origins were evaluated under three conditions of water stress (100%-50%-30% of field capacity). The trial was analyzed with three replicates and two-factor ANOVA in pots within the greenhouse during 35 days. Only dry matter and tiller number showed interaction between populations and water conditions. The most relevant changes in morpho-physiological parameters under strong water stress were reduced dry matter production (48-32% differing among populations), smaller leaf and tiller size (46% and 28%), together with higher water use efficiency (74%), and increased proline and protein contents (144% and 71%), smaller tiller number (30-11% differing among populations) and a slight decrease in leaf water content (3%). The populations differed in growth strategies and morpho-physiological mechanisms to survive water stress, which could be related to their habitat background. The study shows the stability in dry matter production under all levels of water stress, which can be related to the higher tiller number. Due to this plasticity, tall wheatgrass should be studied as a species with great potential to adapt to drought stress.

| S-EPMC6296543 | biostudies-literature

Scalable Mesoporous Platinum Diselenide Nanosheet Synthesis in Water.

Project description:Newly discovered two-dimensional (2D) atomic crystals (nanosheet) of platinum diselenide (PtSe2) have progressively attracted attention due to their expected high performance in catalysis, sensing, electronics, and optoelectronics applications. Further extraordinary physicochemical properties are expected if these nanosheets of platinum diselenide can possess mesoporosity as this may enable a high range of molecular adsorption, enhancing their functionalities in catalysis, batteries, supercapacitors, and sensing. Here, we present for the first time a straightforward, aqueous-phase synthetic strategy for the preparation of scalable nanosheets of platinum diselenide with mesoporous structure via a surfactant-templated self-assembly followed by a thermal annealing phase-transformation process. We used hexamethylenetetramine as a hexagonal honeycomb (sp2-sp3 orbital) scaffold for assembling the Pt and Se organic complexes to form the nanosheet structure, which is stable, preserving the 2D structure and mesoporosity during a thermal annealing at 500 °C. Density functional theory analysis then indicated that the mesoporous nanosheets of platinum diselenide exhibit a high free-energy and large density of π electrons crossing the Fermi level, inferring a high-catalytic performance. This effortless strategy is currently being extended to the synthesis of other transition metal dichalcogenides, including the preparation of multi-metal atomic dichalcogenide nanosheets, for a wide variety of scientific and technological applications.

| S-EPMC6641590 | biostudies-literature

The relationship between tree size and tree water-use: is competition for water size-symmetric or size-asymmetric?

Project description:Relationships between tree size and water use indicate how soil water is partitioned between differently sized individuals, and hence competition for water. These relationships are rarely examined, let alone whether there is consistency in shape across populations. Competition for water among plants is often assumed to be size-symmetric, i.e., exponents (b1) of power functions (water use ∝ biomassb1) equal to 1, with all sizes using the same amount of water proportionally to their size. We tested the hypothesis that b1 actually varies greatly, and based on allometric theory, that b1 is only centered around 1 when size is quantified as basal area or sapwood area (not diameter). We also examined whether b1 varies spatially and temporally in relation to stand structure (height and density) and climate. Tree water use ∝ sizeb1 power functions were fitted for 80 species and 103 sites using the global SAPFLUXNET database. The b1 were centered around 1 when tree size was given as basal area or sapwood area, but not as diameter. The 95% confidence intervals of b1 included the theoretical predictions for the scaling of plant vascular networks. b1 changed through time within a given stand for the species with the longest time series, such that larger trees gained an advantage during warmer and wetter conditions. Spatial comparisons across the entire dataset showed that b1 correlated only weakly (R2 < 12%) with stand structure or climate, suggesting that inter-specific variability in b1 and hence the symmetry of competition for water may be largely related to inter-specific differences in tree architecture or physiology rather than to climate or stand structure. In conclusion, size-symmetric competition for water (b1 ≈ 1) may only be assumed when size is quantified as basal area or sapwood area, and when describing a general pattern across forest types and species. There is substantial deviation in b1 between individual stands and species.

| S-EPMC9838098 | biostudies-literature

Characterization of the complete chloroplast genome of <i>Pterocarya stenoptera</i>, a tall deciduous tree of the family Juglandaceae.

Project description:Pterocarya stenoptera, also called Chinese wingnut in China, is a tall deciduous tree of the walnut family (Juglandaceae). P. stenoptera is one of the most popular shade trees owing to its tall and graceful form and rapid growth rate. In the present study, the chloroplast genome of P. stenoptera was assembled and analyzed phylogenetically. The chloroplast genome of P. stenoptera is 160,212 bp in length, with a large single-copy region (LSC) of 88,724 bp, a small single-copy region (SSC) of 18,396 bp, and a pair of inverted repeat regions (IRs) of 26,046 bp, forming a typical quadripartite structure. A total of 130 genes are annotated from the chloroplast genome of P. stenoptera, including 82 protein-coding genes, 40 transfer RNA (tRNAs) genes, and 8 ribosomal RNA (rRNAs) genes. The GC content of the chloroplast genome is 36.2%. Phylogenetic analysis based on the common proteins from P. stenoptera and 14 related species confirmed the close relationship between Pterocarya and Juglans.

| S-EPMC7748486 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data