Dataset Information

Fungal diversity in canopy soil of silver beech, Nothofagus menziesii (Nothofagaceae).

ABSTRACT: Adventitious roots in canopy soils associated with silver beech (Nothofagus menziesii Hook.f. (Nothofagaceae)) form ectomycorrhizal associations. We investigated the extent to which canopy ectomycorrhizal communities contribute to overall diversity of ectomycorrhizal fungi associated with silver beech. Hyphal ingrowth bags were buried for 12 months in canopy and terrestrial soils of five trees at one site. We used amplicon sequencing of the nuclear ribosomal internal transcribed spacer 2 region (ITS2) to assess diversity of both ectomycorrhizal and non-ectomycorrhizal OTUs in hyphal ingrowth bags. There was a significant difference in ectomycorrhizal fungal community diversity between the terrestrial and canopy hyphal ingrowth bag communities. Ectomycorrhizal community composition of the terrestrial and canopy environments was also significantly different. Some ectomycorrhizal taxa were significantly differentially represented in either the terrestrial or canopy environment. The hyphal ingrowth bags also accumulated non-ectomycorrhizal species. The non-ectomycorrhizal fungi also had significantly different diversity and community composition between the canopy and terrestrial environments. Like the ectomycorrhizal community, some non-ectomycorrhizal taxa were significantly differentially represented in either the terrestrial or canopy environment. The canopy soil microhabitat provides a novel environment for growth of ectomycorrhizal adventitious roots and enables the spatial partitioning of ectomycorrhizal and non-ectomycorrhizal fungal diversity in the forest.

SUBMITTER: Nilsen AR

PROVIDER: S-EPMC6980614 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Fungal diversity in canopy soil of silver beech, Nothofagus menziesii (Nothofagaceae).

Nilsen Andy R AR Teasdale Suliana E SE Guy Paul L PL Summerfield Tina C TC Orlovich David A DA

PloS one 20200124 1

Adventitious roots in canopy soils associated with silver beech (Nothofagus menziesii Hook.f. (Nothofagaceae)) form ectomycorrhizal associations. We investigated the extent to which canopy ectomycorrhizal communities contribute to overall diversity of ectomycorrhizal fungi associated with silver beech. Hyphal ingrowth bags were buried for 12 months in canopy and terrestrial soils of five trees at one site. We used amplicon sequencing of the nuclear ribosomal internal transcribed spacer 2 region ...[more]

PMID: 31978185

Similar Datasets

Project description:Native Andean-Patagonian Nothofagus forests harbour a unique diversity of microorganisms with diverse ecological roles. Although ectomycorrhizal associations constitute an important fragment of the biota associated with these forests, the factors affecting such communities are largely unknown. We investigated the biodiversity, relative abundance, and composition of ectomycorrhizal fungal communities in relation to two host tree species and ages and the soil properties in six monospecific and mixed evergreen-deciduous Nothofagus forests. We used the internal transcribed spacer (ITS2) region by sequencing 9,600 ectomycorrhizae (ECM) root tips for the identification of fungi. In total, 1,125 fungal taxa at the genus level distributed over 131 orders were identified. The phyla Ascomycota (34.5%) and Basidiomycota (62.1%) were the most abundant, whereas Mucoromycota (3.1%), Chytridiomycota, Cryptomycota, Olpidiomycota, and Zoopagomycota occurred less frequently. The highest taxon diversity was found in old trees, whereas young trees often exhibited a lower diversity of the associated fungi. The fungal taxa were grouped into seven broad ecological categories, of which saprotrophic associations were most common, followed by pathotrophic, pathotrophic-saprotrophic-symbiotrophic, pathotrophic-saprotrophic, and symbiotrophic associations. We did not detect significant differences in the number of taxa in each category between young and old N. dombeyi and N. obliqua. Overall, the scale of the Illumina sequencing approach allowed us to detect a fungal taxa diversity that would not be possible to find through surveys of fruiting bodies alone and that have never been observed in Nothofagus forests before. Our findings suggest the impact of the proximity between sites, the similarity of the soil conditions, and anthropogenic use of the forests on the belowground fungal community's diversity and composition. Furthermore, there were differences between above- and belowground occurrences of the edible mushrooms B. loyo and Ramaria spp. However, future research, including on EMC tips found beneath fairy rings could provide significantly better correlations with the occurrence of aboveground fruiting body.

Project description:Bryophytes (liverworts, mosses and hornworts) are one of the most diverse plant groups worldwide but one of the least studied in temperate forests from an ecological perspective. In comparison to vascular plants, bryophytes have a broader distribution and a longer altitudinal gradient, and their influence on the landscape is poorly understood. The objective was to evaluate environmental drivers that can influence bryophyte cover, richness, diversity, and nestedness in different forest canopy compositions in two typical landscapes across the natural distribution of bryophytes in Tierra del Fuego (Argentina). Three natural Nothofagus forest types (pure deciduous, pure evergreen, and mixed deciduous-evergreen) in two landscapes (coasts < 100 m.a.s.l. and mountains > 400 m.a.s.l.) were selected (N = 60 plots). In each plot, we established one transect (10 m length) to measure bryophyte cover (point-intercept method). Data were evaluated using generalized linear mixed models and multivariate analyses. The studied environmental drivers were mainly explained by the microclimate, with higher effective annual precipitation and relative air humidity in the coastal forests and higher soil moisture in the mountain forests. Greater liverwort richness was found in evergreen forests at the mountain (9 species) than at the coastal, while mosses showed higher richness in mixed deciduous-evergreen forests at the coastal (11 species) than at the mountain. However, the expected richness according to the rarefaction/extrapolation curves suggested that it is possible to record additional species, except for liverworts in pure deciduous forests on the coasts. Similarities and differences among the studied forest types and among plots of the same forest type and landscape were detected. These differences in the studied indexes (similarity that varied between 0 and 1) ranged from 0.09-0.48 for liverworts and 0.05-0.65 for mosses. Moreover, these results indicated that pure evergreen and mixed deciduous-evergreen forests presented higher moss cover (10.7% and 10.0%, respectively), mainly in the mountains than on the coast. These outputs highlight the need to explore differences at greater altitudinal ranges to achieve sustainability objectives conservation planning for bryophytes in southernmost forests.

Project description:Interactions and feedbacks between aboveground and belowground biomes are fundamental in controlling ecosystem functions and stability. However, the relationship between plant diversity and soil microbial diversity is elusive. Moreover, it remains unknown whether plant diversity loss will cause the stability of soil microbial communities to deteriorate. To shed light on these questions, we conducted a pot-based experiment to manipulate the plant richness gradient (1, 2, 4, or 8 species) and plant [Symphyotrichum subulatum (Michx.) G. L. Nesom] invasion status. We found that, in the noninvasion treatment, soil fungal diversity significantly and positively correlated with plant diversity, while the relationship between bacterial and plant diversity was not significant. Under plant invasion conditions, the coupling of plant-fungal alpha diversity relationship was enhanced, but the plant-fungal beta diversity relationship was decoupled. We also found significant positive relationships between plant diversity and soil microbial resistance. The observed positive relationships were determined by turnover (species substitution) and nestedness (species loss) processes for bacterial and fungal communities, respectively. Our study demonstrated that plant diversity enhanced soil fungal diversity and microbial resistance in response to plant invasion. This study expands our knowledge about the aboveground-belowground diversity relationship and the diversity-stability relationship.IMPORTANCE Our study newly showed that plant invasion significantly altered relationships between aboveground and belowground diversity. Specifically, plant richness indirectly promoted soil fungal richness through the increase of soil total carbon (TC) without plant invasion, while plant richness had a direct positive effect on soil fungal richness under plant invasion conditions. Our study highlights the effect of plant diversity on soil fungal diversity, especially under plant invasion conditions, and the plant diversity effect on microbial resistance in response to plant invasion. These novel findings add important knowledge about the aboveground-belowground diversity relationship and the diversity-stability relationship.

Dataset Information

Fungal diversity in canopy soil of silver beech, Nothofagus menziesii (Nothofagaceae).

Publications

Fungal diversity in canopy soil of silver beech, Nothofagus menziesii (Nothofagaceae).

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets