Dataset Information

Genome Survey and Transcriptome Analysis on Mycelia and Primordia of Agaricus blazei.

ABSTRACT: Agaricus blazei, a type of edible straw-rotting mushroom with somewhat sweet taste and fragrance of almonds, has attracted considerable scientific and practical attention. High-throughput Illumina PE150 and PacBio RSII platform were employed to generate a genomic sequence. De novo assembly generated 36 contigs with 38,686,133?bp in size, containing 10,119 putative predicted genes. Additionally, we also studied transcriptional regulation of the mycelia and the primordia for exploration of genes involved in fruiting body formation. Expression profiling analysis revealed that 2,164 genes were upregulated in mycelia and 1,557 in primordia. Functional enrichment showed that differentially expressed genes associated with response to stress, ribosome biogenesis, arginine biosynthesis, and steroid biosynthesis pathway were more active in fruiting body. The genome and transcriptome analysis of A. blazei provide valuable sequence resources and contribute to our understanding of genes related to the biosynthesis pathway of polysaccharide and benzaldehyde, as well as the fruiting body formation.

SUBMITTER: Lu YP

PROVIDER: S-EPMC6983287 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Publications

Genome Survey and Transcriptome Analysis on Mycelia and Primordia of <i>Agaricus blazei</i>.

Lu Yuan-Ping YP Liao Jian-Hua JH Guo Zhong-Jie ZJ Cai Zhi-Xin ZX Chen Mei-Yuan MY

BioMed research international 20200114

<i>Agaricus blazei</i>, a type of edible straw-rotting mushroom with somewhat sweet taste and fragrance of almonds, has attracted considerable scientific and practical attention. High-throughput Illumina PE150 and PacBio RSII platform were employed to generate a genomic sequence. De novo assembly generated 36 contigs with 38,686,133 bp in size, containing 10,119 putative predicted genes. Additionally, we also studied transcriptional regulation of the mycelia and the primordia for exploration of ...[more]

PMID: 32025516

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Dataset Information

Genome Survey and Transcriptome Analysis on Mycelia and Primordia of Agaricus blazei.

Publications

Genome Survey and Transcriptome Analysis on Mycelia and Primordia of <i>Agaricus blazei</i>.

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