Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life.
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ABSTRACT:
SUBMITTER: Shakya M
PROVIDER: S-EPMC6997174 | biostudies-literature | 2020 Feb
REPOSITORIES: biostudies-literature
Publications
Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life.
Shakya Migun M Ahmed Sanaa A SA Davenport Karen W KW Flynn Mark C MC Lo Chien-Chi CC Chain Patrick S G PSG
Scientific reports 20200203 1
There is growing interest in reconstructing phylogenies from the copious amounts of genome sequencing projects that target related viral, bacterial or eukaryotic organisms. To facilitate the construction of standardized and robust phylogenies for disparate types of projects, we have developed a complete bioinformatic workflow, with a web-based component to perform phylogenetic and molecular evolutionary (PhaME) analysis from sequencing reads, draft assemblies or completed genomes of closely rela ...[more]
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