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Very rapid cloning, expression and identifying specificity of T-cell receptors for T-cell engineering.

ABSTRACT: Neoantigens can be predicted and in some cases identified using the data obtained from the whole exome sequencing and transcriptome sequencing of tumor cells. These sequencing data can be coupled with single-cell RNA sequencing for the direct interrogation of the transcriptome, surfaceome, and pairing of ?? T-cell receptors (TCR??) from hundreds of single T cells. Using these 2 large datasets, we established a platform for identifying antigens recognized by TCR??s obtained from single T cells. Our approach is based on the rapid expression of cloned TCR?? genes as Sleeping Beauty transposons and the determination of the introduced TCR??s' antigen specificity and avidity using a reporter cell line. The platform enables the very rapid identification of tumor-reactive TCRs for the bioengineering of T cells with redirected specificity.

SUBMITTER: Zong S

PROVIDER: S-EPMC7010234 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Very rapid cloning, expression and identifying specificity of T-cell receptors for T-cell engineering.

Zong Shan S Mi Tiejuan T Flores Leo G LG Alpert Amir A Olivares Simon S Patel Krina K Maiti Sourindra S Mcnamara George G Cooper Laurence J N LJN Torikai Hiroki H

PloS one 20200210 2

Neoantigens can be predicted and in some cases identified using the data obtained from the whole exome sequencing and transcriptome sequencing of tumor cells. These sequencing data can be coupled with single-cell RNA sequencing for the direct interrogation of the transcriptome, surfaceome, and pairing of αβ T-cell receptors (TCRαβ) from hundreds of single T cells. Using these 2 large datasets, we established a platform for identifying antigens recognized by TCRαβs obtained from single T cells. O ...[more]

PMID: 32040512

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