Dataset Information

Generalized Linear Mixed Models with Gaussian Mixture Random Effects: Inference and Application.

ABSTRACT: We propose a new class of generalized linear mixed models with Gaussian mixture random effects for clustered data. To overcome the weak identifiability issues, we fit the model using a penalized Expectation Maximization (EM) algorithm, and develop sequential locally restricted likelihood ratio tests to determine the number of components in the Gaussian mixture. Our work is motivated by an application to nationwide kidney transplant center evaluation in the United States, where the patient-level post-surgery outcomes are repeated measures of the care quality of the transplant centers. By taking into account patient-level risk factors and modeling the center effects by a finite Gaussian mixture model, the proposed model provides a convenient framework to study the heterogeneity among the transplant centers and controls the false discovery rate when screening for transplant centers with non-standard performance.

SUBMITTER: Pan L

PROVIDER: S-EPMC7021245 | biostudies-literature | 2020 Jan

REPOSITORIES: biostudies-literature

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Publications

Generalized Linear Mixed Models with Gaussian Mixture Random Effects: Inference and Application.

Pan Lanfeng L Li Yehua Y He Kevin K Li Yanming Y Li Yi Y

Journal of multivariate analysis 20191015

We propose a new class of generalized linear mixed models with Gaussian mixture random effects for clustered data. To overcome the weak identifiability issues, we fit the model using a penalized Expectation Maximization (EM) algorithm, and develop sequential locally restricted likelihood ratio tests to determine the number of components in the Gaussian mixture. Our work is motivated by an application to nationwide kidney transplant center evaluation in the United States, where the patient-level ...[more]

PMID: 32063658

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Project description:As statistical approaches are getting increasingly used in linguistics, attention must be paid to the choice of methods and algorithms used. This is especially true since they require assumptions to be satisfied to provide valid results, and because scientific articles still often fall short of reporting whether such assumptions are met. Progress is being, however, made in various directions, one of them being the introduction of techniques able to model data that cannot be properly analyzed with simpler linear regression models. We report recent advances in statistical modeling in linguistics. We first describe linear mixed-effects regression models (LMM), which address grouping of observations, and generalized linear mixed-effects models (GLMM), which offer a family of distributions for the dependent variable. Generalized additive models (GAM) are then introduced, which allow modeling non-linear parametric or non-parametric relationships between the dependent variable and the predictors. We then highlight the possibilities offered by generalized additive models for location, scale, and shape (GAMLSS). We explain how they make it possible to go beyond common distributions, such as Gaussian or Poisson, and offer the appropriate inferential framework to account for 'difficult' variables such as count data with strong overdispersion. We also demonstrate how they offer interesting perspectives on data when not only the mean of the dependent variable is modeled, but also its variance, skewness, and kurtosis. As an illustration, the case of phonemic inventory size is analyzed throughout the article. For over 1,500 languages, we consider as predictors the number of speakers, the distance from Africa, an estimation of the intensity of language contact, and linguistic relationships. We discuss the use of random effects to account for genealogical relationships, the choice of appropriate distributions to model count data, and non-linear relationships. Relying on GAMLSS, we assess a range of candidate distributions, including the Sichel, Delaporte, Box-Cox Green and Cole, and Box-Cox t distributions. We find that the Box-Cox t distribution, with appropriate modeling of its parameters, best fits the conditional distribution of phonemic inventory size. We finally discuss the specificities of phoneme counts, weak effects, and how GAMLSS should be considered for other linguistic variables.

Dataset Information

Generalized Linear Mixed Models with Gaussian Mixture Random Effects: Inference and Application.

Publications

Generalized Linear Mixed Models with Gaussian Mixture Random Effects: Inference and Application.

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