Dataset Information

Explicit Sequence Memory in Recall of Temporally-structured Episodes.

ABSTRACT: The order in which events unfold over time is an important scaffold aiding recollection. This study asks whether explicit order memory is enhanced for items sharing similar internally-driven temporal contexts. To tap internally-driven temporal context, we capitalized on the Temporal Contiguity Effect whereby recollection of one item promotes recall of adjacently-encoded items. We compared pairs encoded and retrieved contiguously (cont-enc-ret), whose items share internally-driven temporal contexts, to pairs retrieved, but not encoded, contiguously (cont-ret) and to pairs encoded, but not retrieved, contiguously (cont-enc). Cont-enc-ret pairs exhibited superior relative order over cont-ret pairs, supporting accounts emphasizing shared temporal context as opposed to temporal distinctiveness in driving sequence memory. No difference was found in absolute order between the pair types, in line with theories suggesting a dissociation between relative and absolute order. Additionally, cont-enc-ret and cont-enc pairs exhibited equivalent relative order, supporting the role of encoding as opposed to retrieval in the enhancement of relative order. Finally, cont-enc-ret pairs were perceived as closer than cont-enc pairs, supporting the claim that cont-enc-ret pairs constitute part of a temporally-coherent episode. Together, these results implicate internally-driven temporal context in the formation of temporally-structured episodes that enhances sequence memory of the items within the episode.

SUBMITTER: Stern Y

PROVIDER: S-EPMC7021684 | biostudies-literature | 2020 Feb

REPOSITORIES: biostudies-literature

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Explicit Sequence Memory in Recall of Temporally-structured Episodes.

Stern Yonatan Y Katz Ron R Sadeh Talya T

Scientific reports 20200214 1

The order in which events unfold over time is an important scaffold aiding recollection. This study asks whether explicit order memory is enhanced for items sharing similar internally-driven temporal contexts. To tap internally-driven temporal context, we capitalized on the Temporal Contiguity Effect whereby recollection of one item promotes recall of adjacently-encoded items. We compared pairs encoded and retrieved contiguously (cont-enc-ret), whose items share internally-driven temporal contex ...[more]

PMID: 32060365

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Project description:BackgroundGenetic material extracted from in situ microbial communities has high promise as an indicator of biological system status. However, the challenge is to access genomic information from all organisms at the population or community scale to monitor the biosystem's state. Hence, there is a need for a better diagnostic tool that provides a holistic view of a biosystem's genomic status. Here, we introduce an in vitro methodology for genomic pattern classification of biological samples that taps large amounts of genetic information from all genes present and uses that information to detect changes in genomic patterns and classify them.ResultsWe developed a biosensing protocol, termed Biological Memory, that has in vitro computational capabilities to "learn" and "store" genomic sequence information directly from genomic samples without knowledge of their explicit sequences, and that discovers differences in vitro between previously unknown inputs and learned memory molecules. The Memory protocol was designed and optimized based upon (1) common in vitro recombinant DNA operations using 20-base random probes, including polymerization, nuclease digestion, and magnetic bead separation, to capture a snapshot of the genomic state of a biological sample as a DNA memory and (2) the thermal stability of DNA duplexes between new input and the memory to detect similarities and differences. For efficient read out, a microarray was used as an output method. When the microarray-based Memory protocol was implemented to test its capability and sensitivity using genomic DNA from two model bacterial strains, i.e., Escherichia coli K12 and Bacillus subtilis, results indicate that the Memory protocol can "learn" input DNA, "recall" similar DNA, differentiate between dissimilar DNA, and detect relatively small concentration differences in samples.ConclusionsThis study demonstrated not only the in vitro information processing capabilities of DNA, but also its promise as a genomic pattern classifier that could access information from all organisms in a biological system without explicit genomic information. The Memory protocol has high potential for many applications, including in situ biomonitoring of ecosystems, screening for diseases, biosensing of pathological features in water and food supplies, and non-biological information processing of memory devices, among many.

Dataset Information

Explicit Sequence Memory in Recall of Temporally-structured Episodes.

Publications

Explicit Sequence Memory in Recall of Temporally-structured Episodes.

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