Dataset Information

Fungal and Bacterial Communities Exhibit Consistent Responses to Reversal of Soil Acidification and Phosphorus Limitation over Time.

ABSTRACT: Chronic acid deposition affects many temperate hardwood forests of the northeastern United States, reduces soil pH and phosphorus (P) availability, and can alter the structure and function of soil microbial communities. The strategies that microorganisms possess for survival in acidic, low P soil come at a carbon (C) cost. Thus, how microbial communities respond to soil acidification in forests may be influenced by plant phenological stage as C allocation belowground varies; however, this remains largely unexplored. In this study, we examined microbial communities in an ecosystem level manipulative experiment where pH and/or P availability were elevated in three separate forests in Northeastern Ohio. Tag-encoded pyrosequencing was used to examine bacterial and fungal community structure at five time points across one year corresponding to plant phenological stages. We found significant effects of pH treatment and time on fungal and bacterial communities in soil. However, we found no interaction between pH treatment and time of sampling for fungal communities and only a weak interaction between pH elevation and time for bacterial communities, suggesting that microbial community responses to soil pH are largely independent of plant phenological stage. In addition, fungal communities were structured largely by site, suggesting that fungi were responding to differences between the forests, such as plant community differences.

SUBMITTER: R Carrino-Kyker S

PROVIDER: S-EPMC7022789 | biostudies-literature | 2019 Dec

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Fungal and Bacterial Communities Exhibit Consistent Responses to Reversal of Soil Acidification and Phosphorus Limitation over Time.

R Carrino-Kyker Sarah S P Coyle Kaitlin K A Kluber Laurel L J Burke David D

Microorganisms 20191218 1

Chronic acid deposition affects many temperate hardwood forests of the northeastern United States, reduces soil pH and phosphorus (P) availability, and can alter the structure and function of soil microbial communities. The strategies that microorganisms possess for survival in acidic, low P soil come at a carbon (C) cost. Thus, how microbial communities respond to soil acidification in forests may be influenced by plant phenological stage as C allocation belowground varies; however, this remain ...[more]

PMID: 31861322

Similar Datasets

Project description:The soil fungal community plays an important role in forest ecosystems and is crucially influenced by forest secondary succession. However, the driving factors of fungal community and function during temperate forest succession and their potential impact on succession processes remain poorly understood. In this study, we investigated the dynamics of the soil fungal community in three temperate forest secondary successional stages (shrublands, coniferous forests, and deciduous broad-leaved forests) using high-throughput DNA sequencing coupled with functional prediction via the FUNGuild database. We found that fungal community richness, α-diversity, and evenness decreased significantly during the succession process. Soil available phosphorus and nitrate nitrogen decreased significantly after initial succession occurred, and redundancy analysis showed that both were significant predictors of soil fungal community structure. Among functional groups, fungal saprotrophs and pathotrophs represented by plant pathogens were significantly enriched in the early-successional stage, while fungal symbiotrophs represented by ectomycorrhiza were significantly increased in the late-successional stage. The abundance of both saprotroph and pathotroph fungal guilds was positively correlated with soil nitrate nitrogen and available phosphorus content. Ectomycorrhizal fungi were negatively correlated with nitrate nitrogen and available phosphorus content and positively correlated with ammonium nitrogen content. These results indicate that the dynamics of fungal community and function reflected the changes in nitrogen and phosphorus availability caused by the secondary succession in temperate forests. The fungal plant pathogen accumulated in the early-successional stage and ectomycorrhizal fungi accumulated in the late-successional stage may have a potential role in promoting forest succession. These findings contribute to a better understanding of the response of soil fungal communities to secondary forest succession and highlight the importance of fungal communities during the successional process.

Project description:Soybean continuous cropping (SC) leads to continuous cropping obstacles, and soil-borne fungal diseases occur frequently. Rotation can alleviate continuous cropping obstacles. However, the long-term effects of continuous cropping and rotation on the structure and function of the fungal community in soil are not clear. In this study, five cropping systems, SC, fallow (CK), fallow-soybean (FS), corn-soybean (CS), and wheat-soybean (WS), were implemented in the long-term continuous cropping area of soybean. After 13 years of planting, high-throughput sequencing was used to evaluate the structure and diversity of soil fungal communities and to study the relationship between fungal communities and soil environmental factors. The results showed that the abundance and diversity of fungal flora in SC soil were the highest. There were significant differences in the formation of soil fungal communities between soybean continuous cropping and the other treatments. There were 355 species of endemic fungi in SC soil. There were 231 and 120 endemic species in WS and CS, respectively. The relative abundance of the potential pathogens Lectera, Gibberella, and Fusarium in the SC treatment soil was significantly high, and the abundance of all potential pathogens in CK was significantly the lowest. The abundance of Lectera and Fusarium in CS was significantly the lowest. There was a positive correlation between potential pathogens in the soil. The relative abundance of potential pathogens in the soil was significantly positively correlated with the relative abundance of Ascomycetes and negatively correlated with the relative abundance of Basidiomycetes. Potential pathogenic genera had a significant negative correlation with soil OM, available Mn, K and soil pH and a significant positive correlation with the contents of soil available Cu, Fe, and Zn. In general, the fungal communities of SC, FS, WS, and CS were divided into one group, which was significantly different from CK. WS and CS were more similar in fungal community structure. The CK and CS treatments reduced the relative abundance of soil fungi and potential pathogens. Our study shows that SC and FS lead to selective stress on fungi and pathogenic fungi and lead to the development of fungal community abundance and diversity, while CK and CS can reduce this development, which is conducive to plant health.

Project description:Soil and microbial biomass carbon (C), nitrogen (N), and phosphorus (P) play an important role in soil nutrient dynamics in biogeochemical cycles of terrestrial ecosystems. However, increased human activities as a result of agricultural intensification on soil nutrients and microbial C:N:P stoichiometry are poorly understood in this fragile forest-savanna transition agroecosystem. This study aimed to (i) assess soil and microbial C, N, and P stoichiometry in different land use systems, and (ii) examine the effect of soil and microbial C, N, and P stoichiometry on soils susceptible to human-induced land use changes. A total of 82 composite soil samples at a depth of 0–20 cm were sampled from forest, savanna, grassland, fallow and cropland for laboratory analysis. The results revealed that the concentrations of C, N, and P were low in Fallow and Cropland compared to other land use systems. Analysis of variance in microbial C, N, and P stoichiometric ratios revealed a significant decreasing tendency compared to soil C:N, C:P and N:P ratios with no statistical significance (p < 0.05). The C:P and N:P ratios were low compared to the C:N ratio in land uses. A significant positive correlation was observed between MBC and MBN (0.95; p < 0.01), and with C and N (0.69; p < 0.01). There were significant interactive effects of land use on soil and microbial variables. The estimated microbial C:N:P stoichiometric ratios (21:2:1) were well constrained in the study area. The transition from Forest to Cropland resulted in 64%, 52%, and 71% reduction in C, N, and P, respectively. This implies that phosphorus is the main factor limiting productivity. The low availability of phosphorus in these tropical soils may have resulted in low C:P and N:P ratios. Therefore, we conclude that our results highlight the importance of phosphorus limitation on ratios of microbial C:P and N:P in landuse systems. Nutrient inputs such as fertilizers, manure and crop residues should be applied to croplands to improve soil and microbial C, N and P levels. Further, effects of land use on soil nutrient status and stoichiometry at 1-meter depth will be considered in our future work.

Dataset Information

Fungal and Bacterial Communities Exhibit Consistent Responses to Reversal of Soil Acidification and Phosphorus Limitation over Time.

Publications

Fungal and Bacterial Communities Exhibit Consistent Responses to Reversal of Soil Acidification and Phosphorus Limitation over Time.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets