A de novo reference transcriptome for Bolitoglossa vallecula, an Andean mountain salamander in Colombia.

ABSTRACT: The amphibian order Caudata, contains several important model species for biological research. However, there is need to generate transcriptome data from representative species of the primary salamander families. Here we describe a de novo reference transcriptome for a terrestrial salamander, Bolitoglossa vallecula (Caudata: Plethodontidae). We employed paired-end (PE) illumina RNA sequencing to assemble a de novo reference transcriptome for B. vallecula. Assembled transcripts were compared against sequences from other vertebrate taxa to identify orthologous genes, and compared to the transcriptome of a close plethodontid relative (Bolitoglossa ramosi) to identify commonly expressed genes in the skin. This dataset should be useful to future comparative st

SUBMITTER: Arenas Gomez CM 

PROVIDER: S-EPMC7038590 | biostudies-literature | 2020 Apr

REPOSITORIES: biostudies-literature