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Revisiting the Oxidation of Graphite: Reaction Mechanism, Chemical Stability, and Structure Self-Regulation.

ABSTRACT: To fully understand the chemical structure of graphene oxide and the oxidation chemistry of sp2 carbon sites, we conducted a practical experiment and density functional theory combined study on the oxidation process of graphite. The nuclear magnetic resonance, thermogravimetric analysis, and X-ray photoelectron spectroscopy results of unhydrolyzed oxidized graphite indicate that the oxidation process involves the intercalating oxidation, where electrically neutral species is the oxidizing agent, and the diffusive-oxidation, where MnO3 + is the oxidizing agent. An intrinsic formation and conversion path of oxygen-containing functional groups is proposed based on the experimental results and further interpreted with the aid of frontier molecular orbital theory and density functional theory. Meanwhile, the two unique features of the oxidation process of graphite, the chemistry stability of oxygen-containing functional groups in the strong oxidizing medium, and the self-regulation of the oxidation process are theoretically reasoned.

SUBMITTER: Li C

PROVIDER: S-EPMC7045566 | biostudies-literature | 2020 Feb

REPOSITORIES: biostudies-literature

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Revisiting the Oxidation of Graphite: Reaction Mechanism, Chemical Stability, and Structure Self-Regulation.

Li Chang C Chen Xi X Shen Liming L Bao Ningzhong N

ACS omega 20200214 7

To fully understand the chemical structure of graphene oxide and the oxidation chemistry of sp<sup>2</sup> carbon sites, we conducted a practical experiment and density functional theory combined study on the oxidation process of graphite. The nuclear magnetic resonance, thermogravimetric analysis, and X-ray photoelectron spectroscopy results of unhydrolyzed oxidized graphite indicate that the oxidation process involves the intercalating oxidation, where electrically neutral species is the oxidi ...[more]

PMID: 32118154

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Project description:Phenylpropenes, a large group of plant volatile compounds that serve in multiple roles in defense and pollinator attraction, contain a propenyl side chain. Eugenol synthase (EGS) catalyzes the reductive displacement of acetate from the propenyl side chain of the substrate coniferyl acetate to produce the allyl-phenylpropene eugenol. We report here the structure determination of EGS from basil (Ocimum basilicum) by protein x-ray crystallography. EGS is structurally related to the short-chain dehydrogenase/reductases (SDRs), and in particular, enzymes in the isoflavone-reductase-like subfamily. The structure of a ternary complex of EGS bound to the cofactor NADP(H) and a mixed competitive inhibitor EMDF ((7S,8S)-ethyl (7,8-methylene)-dihydroferulate) provides a detailed view of the binding interactions within the EGS active site and a starting point for mutagenic examination of the unusual reductive mechanism of EGS. The key interactions between EMDF and the EGS-holoenzyme include stacking of the phenyl ring of EMDF against the cofactor's nicotinamide ring and a water-mediated hydrogen-bonding interaction between the EMDF 4-hydroxy group and the side-chain amino moiety of a conserved lysine residue, Lys132. The C4 carbon of nicotinamide resides immediately adjacent to the site of hydride addition, the C7 carbon of cinnamyl acetate substrates. The inhibitor-bound EGS structure suggests a two-step reaction mechanism involving the formation of a quinone-methide prior to reduction. The formation of this intermediate is promoted by a hydrogen-bonding network that favors deprotonation of the substrate's 4-hydroxyl group and disfavors binding of the acetate moiety, akin to a push-pull catalytic mechanism. Notably, the catalytic involvement in EGS of the conserved Lys132 in preparing the phenolic substrate for quinone methide formation through the proton-relay network appears to be an adaptation of the analogous role in hydrogen bonding played by the equivalent lysine residue in other enzymes of the SDR family.

Dataset Information

Revisiting the Oxidation of Graphite: Reaction Mechanism, Chemical Stability, and Structure Self-Regulation.

Publications

Revisiting the Oxidation of Graphite: Reaction Mechanism, Chemical Stability, and Structure Self-Regulation.

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