Dataset Information

Assessment of Multi-Image Unmanned Aerial Vehicle Based High-Throughput Field Phenotyping of Canopy Temperature.

ABSTRACT: Canopy temperature (CT) has been related to water-use and yield formation in crops. However, constantly (e.g., sun illumination angle, ambient temperature) as well as rapidly (e.g., clouds) changing environmental conditions make it difficult to compare measurements taken even at short time intervals. This poses a great challenge for high-throughput field phenotyping (HTFP). The aim of this study was to i) set up a workflow for unmanned aerial vehicles (UAV) based HTFP of CT, ii) investigate different data processing procedures to combine information from multiple images into orthomosaics, iii) investigate the repeatability of the resulting CT by means of heritability, and iv) investigate the optimal timing for thermography measurements. Additionally, the approach was v) compared with other methods for HTFP of CT. The study was carried out in a winter wheat field trial with 354 genotypes planted in two replications in a temperate climate, where a UAV captured CT in a time series of 24 flights during 6 weeks of the grain-filling phase. Custom-made thermal ground control points enabled accurate georeferencing of the data. The generated thermal orthomosaics had a high spatial accuracy (mean ground sampling distance of 5.03 cm/pixel) and position accuracy [mean root-mean-square deviation (RMSE) = 4.79 cm] over all time points. An analysis on the impact of the measurement geometry revealed a gradient of apparent CT in parallel to the principle plane of the sun and a hotspot around nadir. Averaging information from all available images (and all measurement geometries) for an area of interest provided the best results by means of heritability. Correcting for spatial in-field heterogeneity as well as slight environmental changes during the measurements were performed with the R package SpATS. CT heritability ranged from 0.36 to 0.74. Highest heritability values were found in the early afternoon. Since senescence was found to influence the results, it is recommended to measure CT in wheat after flowering and before the onset of senescence. Overall, low-altitude and high-resolution remote sensing proved suitable to assess the CT of crop genotypes in a large number of small field plots as is required in crop breeding and variety testing experiments.

SUBMITTER: Perich G

PROVIDER: S-EPMC7052280 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Assessment of Multi-Image Unmanned Aerial Vehicle Based High-Throughput Field Phenotyping of Canopy Temperature.

Perich Gregor G Hund Andreas A Anderegg Jonas J Roth Lukas L Boer Martin P MP Walter Achim A Liebisch Frank F Aasen Helge H

Frontiers in plant science 20200225

Canopy temperature (CT) has been related to water-use and yield formation in crops. However, constantly (e.g., sun illumination angle, ambient temperature) as well as rapidly (e.g., clouds) changing environmental conditions make it difficult to compare measurements taken even at short time intervals. This poses a great challenge for high-throughput field phenotyping (HTFP). The aim of this study was to i) set up a workflow for unmanned aerial vehicles (UAV) based HTFP of CT, ii) investigate diff ...[more]

PMID: 32158459

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Project description:BackgroundThe technology of cotton defoliation is essential for mechanical cotton harvesting. Agricultural unmanned aerial vehicle (UAV) spraying has the advantages of low cost, high efficiency and no mechanical damage to cotton and has been favored and widely used by cotton planters in China. However, there are also some problems of low cotton defoliation rates and high impurity rates caused by unclear spraying amounts of cotton defoliants. The chemical rate recommendation and application should be based upon crop canopy volume rather than on land area. Plant height and leaf area index (LAI) is directly connected to plant canopy structure. Accurate dynamic monitoring of plant height and LAI provides important information for evaluating cotton growth and production. The traditional method to obtain plant height and LAI was s a time-consuming and labor-intensive task. It is very difficult and unrealistic to use the traditional measurement method to make the temporal and spatial variation map of plant height and LAI of large cotton fields. With the application of UAV in agriculture, remote sensing by UAV is currently regarded as an effective technology for monitoring and estimating plant height and LAI.ResultsIn this paper, we used UAV RGB photos to build dense point clouds to estimate cotton plant height and LAI following cotton defoliant spraying. The results indicate that the proposed method was able to dynamically monitor the changes in the LAI of cotton at different times. At 3 days after defoliant spraying, the correlation between the plant height estimated based on the constructed dense point cloud and the measured plant height was strong, with [Formula: see text] and RMSE values of 0.962 and 0.913, respectively. At 10 days after defoliant spraying, the correlation became weaker over time, with [Formula: see text] and RMSE values of 0.018 and 0.027, respectively. Comparing the actual manually measured LAI with the estimated LAI based on the dense point cloud, the [Formula: see text] and RMSE were 0.872 and 0.814 and 0.132 and 0.173 at 3 and 10 days after defoliant spraying, respectively.ConclusionsDense point cloud construction based on UAV remote sensing is a potential alternative to plant height and LAI estimation. The accuracy of LAI estimation can be improved by considering both plant height and planting density.

Project description:Aboveground biomass (AGB) and leaf area index (LAI) are important indicators to measure crop growth and development. Rapid estimation of AGB and LAI is of great significance for monitoring crop growth and agricultural site-specific management decision-making. As a fast and non-destructive detection method, unmanned aerial vehicle (UAV)-based imaging technologies provide a new way for crop growth monitoring. This study is aimed at exploring the feasibility of estimating AGB and LAI of mung bean and red bean in tea plantations by using UAV multispectral image data. The spectral parameters with high correlation with growth parameters were selected using correlation analysis. It was found that the red and near-infrared bands were sensitive bands for LAI and AGB. In addition, this study compared the performance of five machine learning methods in estimating AGB and LAI. The results showed that the support vector machine (SVM) and backpropagation neural network (BPNN) models, which can simulate non-linear relationships, had higher accuracy in estimating AGB and LAI compared with simple linear regression (LR), stepwise multiple linear regression (SMLR), and partial least-squares regression (PLSR) models. Moreover, the SVM models were better than other models in terms of fitting, consistency, and estimation accuracy, which provides higher performance for AGB (red bean: R 2 = 0.811, root-mean-square error (RMSE) = 0.137 kg/m2, normalized RMSE (NRMSE) = 0.134; mung bean: R 2 = 0.751, RMSE = 0.078 kg/m2, NRMSE = 0.100) and LAI (red bean: R 2 = 0.649, RMSE = 0.36, NRMSE = 0.123; mung bean: R 2 = 0.706, RMSE = 0.225, NRMSE = 0.081) estimation. Therefore, the crop growth parameters can be estimated quickly and accurately using the models established by combining the crop spectral information obtained by the UAV multispectral system using the SVM method. The results of this study provide valuable practical guidelines for site-specific tea plantations and the improvement of their ecological and environmental benefits.

Dataset Information

Assessment of Multi-Image Unmanned Aerial Vehicle Based High-Throughput Field Phenotyping of Canopy Temperature.

Publications

Assessment of Multi-Image Unmanned Aerial Vehicle Based High-Throughput Field Phenotyping of Canopy Temperature.

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