Dataset Information

Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication.

ABSTRACT: BACKGROUND:Advances in genome technology have simplified a new comprehension of the genetic and historical processes crucial to rapid phenotypic evolution under domestication. To get new insight into the genetic basis of the dog domestication process, we conducted whole-genome sequence analysis of three wolves and three dogs from Iran which covers the eastern part of the Fertile Crescent located in Southwest Asia where the independent domestication of most of the plants and animals has been documented and also high haplotype sharing between wolves and dog breeds has been reported. RESULTS:Higher diversity was found within the wolf genome compared with the dog genome. A total number of 12.45 million SNPs were detected in all individuals (10.45 and 7.82 million SNPs were identified for all the studied wolves and dogs, respectively) and a total number of 3.49 million small Indels were detected in all individuals (3.11 and 2.24 million small Indels were identified for all the studied wolves and dogs, respectively). A total of 10,571 copy number variation regions (CNVRs) were detected across the 6 individual genomes, covering 154.65?Mb, or 6.41%, of the reference genome (canFam3.1). Further analysis showed that the distribution of deleterious variants in the dog genome is higher than the wolf genome. Also, genomic annotation results from intron and intergenic regions showed that the proportion of variations in the wolf genome is higher than that in the dog genome, while the proportion of the coding sequences and 3'-UTR in the dog genome is higher than that in the wolf genome. The genes related to the olfactory and immune systems were enriched in the set of the structural variants (SVs) identified in this work. CONCLUSIONS:Our results showed more deleterious mutations and coding sequence variants in the domestic dog genome than those in wolf genome. By providing the first Iranian dog and wolf variome map, our findings contribute to understanding the genetic architecture of the dog domestication.

SUBMITTER: Amiri Ghanatsaman Z

PROVIDER: S-EPMC7057629 | biostudies-literature | 2020 Mar

REPOSITORIES: biostudies-literature

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Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication.

Amiri Ghanatsaman Zeinab Z Wang Guo-Dong GD Asadollahpour Nanaei Hojjat H Asadi Fozi Masood M Peng Min-Sheng MS Esmailizadeh Ali A Zhang Ya-Ping YP

BMC genomics 20200304 1

<h4>Background</h4>Advances in genome technology have simplified a new comprehension of the genetic and historical processes crucial to rapid phenotypic evolution under domestication. To get new insight into the genetic basis of the dog domestication process, we conducted whole-genome sequence analysis of three wolves and three dogs from Iran which covers the eastern part of the Fertile Crescent located in Southwest Asia where the independent domestication of most of the plants and animals has b ...[more]

PMID: 32131720

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Project description:Due to domestication, dogs differ from wolves in the way they respond to their environment, including to humans. Selection for tameness and the associated changes to the autonomic nervous system (ANS) regulation have been proposed as the primary mechanisms of domestication. To test this idea, we compared two low-arousal states in equally raised and kept wolves and dogs: resting, a state close to being asleep, and inactive wakefulness, which together take up an important part in the time budgets of wolves and dogs. We measured arousal via cardiac output in three conditions: alone, with a familiar human partner, or with pack members (i.e., conspecifics). Specifically, we compared heart rate (HR) and heart rate variability (HRV) of six wolves and seven dogs. As patterns of resting can vary adaptively, even between closely related species, we predicted that dogs would be generally more aroused than wolves, because living with humans may come with less predictable contexts than living with conspecifics; hence, dogs would need to be responsive at all times. Furthermore, we predicted that due to the effects of domestication, emotional social support by familiar people would reduce arousal more in dogs than in equally human-socialized wolves, leading to more relaxed dogs than wolves when away from the pack. Overall, we found a clear effect of the interactions between species (i.e., wolf versus dog), arousal state (i.e., resting or awake inactive) and test conditions, on both HR and HRV. Wolves and dogs were more aroused when alone (i.e., higher HR and lower HRV) than when in the presence of conspecifics or a familiar human partner. Dogs were more relaxed than wolves when at rest and close to a familiar human but this difference disappeared when awake. In conclusion, instead of the expected distinct overall differences between wolves and dogs in ANS regulation, we rather found subtle context-specific responses, suggesting that such details are important in understanding the domestication process.

Dataset Information

Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication.

Publications

Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication.

Similar Datasets

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