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Phylogenetic analysis of protein sequences based on distribution of length about common sub-string.

ABSTRACT: Up to now, various approaches for phylogenetic analysis have been developed. Almost all of them put stress on analyzing nucleic acid sequences or protein primary sequences. In this paper, we propose a new sequence distance for efficient reconstruction of phylogenetic trees based on the distribution of length about common sub-sequences between two sequences. We describe some applications of this method, which not only show the validity of the method, but also suggest a number of novel phylogenetic insights.

SUBMITTER: Chang G

PROVIDER: S-EPMC7088358 | biostudies-literature | 2011 Mar

REPOSITORIES: biostudies-literature

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Phylogenetic analysis of protein sequences based on distribution of length about common sub-string.

Chang Guisong G Wang Tianming T

The protein journal 20110301 3

Up to now, various approaches for phylogenetic analysis have been developed. Almost all of them put stress on analyzing nucleic acid sequences or protein primary sequences. In this paper, we propose a new sequence distance for efficient reconstruction of phylogenetic trees based on the distribution of length about common sub-sequences between two sequences. We describe some applications of this method, which not only show the validity of the method, but also suggest a number of novel phylogeneti ...[more]

PMID: 21461804

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