Vhcub: Virus-host codon usage co-adaptation analysis.
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ABSTRACT:
SUBMITTER: Anwar AM
PROVIDER: S-EPMC7104870 | biostudies-literature | 2019
REPOSITORIES: biostudies-literature
Publications
<i>vhcub</i>: Virus-host codon usage co-adaptation analysis.
Anwar Ali Mostafa AM Soudy Mohamed M Mohamed Radwa R
F1000Research 20191223
Viruses show noticeable evolution to adapt and reproduce within their hosts. Theoretically, patterns and factors that affect the codon usage of viruses should reflect evolutionary changes that allow them to optimize their codon usage to their hosts. Some software tools can analyze the codon usage of organisms; however, their performance has room for improvement, as these tools do not focus on examining the codon usage co-adaptation between viruses and their hosts. This paper describes the <i>vhc ...[more]
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