Improving the usability and comprehensiveness of microbial databases.
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ABSTRACT:
SUBMITTER: Loeffler C
PROVIDER: S-EPMC7140547 | biostudies-literature | 2020 Apr
REPOSITORIES: biostudies-literature
Publications
Improving the usability and comprehensiveness of microbial databases.
Loeffler Caitlin C Karlsberg Aaron A Martin Lana S LS Eskin Eleazar E Koslicki David D Mangul Serghei S
BMC biology 20200407 1
Metagenomics studies leverage genomic reference databases to generate discoveries in basic science and translational research. However, current microbial studies use disparate reference databases that lack consistent standards of specimen inclusion, data preparation, taxon labelling and accessibility, hindering their quality and comprehensiveness, and calling for the establishment of recommendations for reference genome database assembly. Here, we analyze existing fungal and bacterial databases ...[more]
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