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BioHackathon 2015: Semantics of data for life sciences and reproducible research.


ABSTRACT: We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss issues surrounding the representation, publication, integration, mining and reuse of biological data and metadata across a wide range of biomedical data types of relevance for the life sciences, including chemistry, genotypes and phenotypes, orthology and phylogeny, proteomics, genomics, glycomics, and metabolomics. We describe our progress to address ongoing challenges to the reusability and reproducibility of research results, and identify outstanding issues that continue to impede the progress of bioinformatics research. We share our perspective on the state of the art, continued challenges, and goals for future research and development for the life sciences Semantic Web.

SUBMITTER: Vos RA 

PROVIDER: S-EPMC7141167 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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BioHackathon 2015: Semantics of data for life sciences and reproducible research.

Vos Rutger A RA   Katayama Toshiaki T   Mishima Hiroyuki H   Kawano Shin S   Kawashima Shuichi S   Kim Jin-Dong JD   Moriya Yuki Y   Tokimatsu Toshiaki T   Yamaguchi Atsuko A   Yamamoto Yasunori Y   Wu Hongyan H   Amstutz Peter P   Antezana Erick E   Aoki Nobuyuki P NP   Arakawa Kazuharu K   Bolleman Jerven T JT   Bolton Evan E   Bonnal Raoul J P RJP   Bono Hidemasa H   Burger Kees K   Chiba Hirokazu H   Cohen Kevin B KB   Deutsch Eric W EW   Fernández-Breis Jesualdo T JT   Fu Gang G   Fujisawa Takatomo T   Fukushima Atsushi A   García Alexander A   Goto Naohisa N   Groza Tudor T   Hercus Colin C   Hoehndorf Robert R   Itaya Kotone K   Juty Nick N   Kawashima Takeshi T   Kim Jee-Hyub JH   Kinjo Akira R AR   Kotera Masaaki M   Kozaki Kouji K   Kumagai Sadahiro S   Kushida Tatsuya T   Lütteke Thomas T   Matsubara Masaaki M   Miyamoto Joe J   Mohsen Attayeb A   Mori Hiroshi H   Naito Yuki Y   Nakazato Takeru T   Nguyen-Xuan Jeremy J   Nishida Kozo K   Nishida Naoki N   Nishide Hiroyo H   Ogishima Soichi S   Ohta Tazro T   Okuda Shujiro S   Paten Benedict B   Perret Jean-Luc JL   Prathipati Philip P   Prins Pjotr P   Queralt-Rosinach Núria N   Shinmachi Daisuke D   Suzuki Shinya S   Tabata Tsuyosi T   Takatsuki Terue T   Taylor Kieron K   Thompson Mark M   Uchiyama Ikuo I   Vieira Bruno B   Wei Chih-Hsuan CH   Wilkinson Mark M   Yamada Issaku I   Yamanaka Ryota R   Yoshitake Kazutoshi K   Yoshizawa Akiyasu C AC   Dumontier Michel M   Kosaki Kenjiro K   Takagi Toshihisa T  

F1000Research 20200224


We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss issues surrounding the representation, publication, integration, mining and reuse of biological data and metadata across a wide range of biomedical data types of relevance for the life sciences, including chemistry, genotypes and phenotypes, orthology  ...[more]

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