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Describing historical habitat use of a native fish-Cisco (Coregonus artedi)-in Lake Michigan between 1930 and 1932.

ABSTRACT: With the global-scale loss of biodiversity, current restoration programs have been often required as part of conservation plans for species richness and ecosystem integrity. The restoration of pelagic-oriented cisco (Coregonus artedi) has been an interest of Lake Michigan managers because it may increase the diversity and resilience of the fish assemblages and conserve the integrity of the ecosystems in a changing environment. To inform restoration, we described historical habitat use of cisco by analyzing a unique fishery-independent dataset collected in 1930-1932 by the U.S. Bureau of Fisheries' first research vessel Fulmar and a commercial catch dataset reported by the State of Michigan in the same period, both based on gear fished on the bottom. Our results confirmed that the two major embayments, Green Bay and Grand Traverse Bay, were important habitats for cisco and suggest that the Bays were capable of supporting cisco to complete its entire life cycle in the early 20th century as there was no lack of summer feeding and fall spawning habitats. Seasonally, our results showed that cisco stayed in nearshore waters in spring, migrated to offshore waters in summer, and then migrated back to nearshore waters in fall. The results also suggest that in summer, most ciscoes were in waters with bottom depths of 20-70 m, but the highest cisco density occurred in waters with a bottom depth around 40 m. We highlight the importance of embayment habitats to cisco restoration and the seasonal migration pattern of cisco identified in this study, which suggests that a restored cisco population can diversify the food web by occupying different habitats from the exotic fishes that now dominate the pelagic waters of Lake Michigan.

SUBMITTER: Kao YC

PROVIDER: S-EPMC7141674 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Describing historical habitat use of a native fish-Cisco (Coregonus artedi)-in Lake Michigan between 1930 and 1932.

Kao Yu-Chun YC Bunnell David B DB Eshenroder Randy L RL Murray Devin N DN

PloS one 20200408 4

With the global-scale loss of biodiversity, current restoration programs have been often required as part of conservation plans for species richness and ecosystem integrity. The restoration of pelagic-oriented cisco (Coregonus artedi) has been an interest of Lake Michigan managers because it may increase the diversity and resilience of the fish assemblages and conserve the integrity of the ecosystems in a changing environment. To inform restoration, we described historical habitat use of cisco b ...[more]

PMID: 32267898

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Project description:We used microarrays and a previously established linkage map to localize the genetic determinants of brain gene expression for a backcross family of lake whitefish species pairs (Coregonus sp.). Our goals were to elucidate the genomic distribution and sex-specificity of brain expression QTL (eQTL) and to determine the extent to which genes controlling transcriptional variation may underlie adaptive divergence in the recently evolved dwarf (limnetic) and normal (benthic) whitefish. We observed a sex-bias in transcriptional genetic architecture, with more eQTL observed in males, as well as divergence in genome location of eQTL between sexes. Hotspots of nonrandom aggregations of up to 32 eQTL in one location were observed. We identified candidate genes for species pair divergence involved with energetic metabolism, protein synthesis, and neural development based on co-localization of eQTL for these genes with eight previously identified adaptive phenotypic QTL and four previously identified outlier loci from a genome scan in natural populations. 88% of eQTL-phenotypic QTL co-localization involved growth rate and condition factor QTL, two traits central to adaptive divergence between whitefish species pairs. Hotspots co-localized with phenotypic QTL in several cases, revealing possible locations where master regulatory genes, such as a zinc finger protein in one case, control gene expression directly related to adaptive phenotypic divergence. We observed little evidence of co-localization of brain eQTL with behavioral QTL, which provides insight on the genes identified by behavioral QTL studies. These results extend to the transcriptome level previous work illustrating that selection has shaped recent parallel divergence between dwarf and normal lake whitefish species pairs and that metabolic, more than morphological differences appear to play a key role in this divergence. Keywords: eQTL mapping, gene expression, linkage mapping, adaptive radiation, Coregonus, microarrays The objective of this study was to elucidate the genomic distribution and sex-specificity of brain eQTL in dwarf and normal lake whitefish. Dissected brain tissue (250-350 mg) was sampled for 55 individuals from a hybrid x dwarf backcross mapping family. We used a loop design (YANG and SPEED 2002; CHURCHILL 2002) to maximize the number of sampled meioses. Each of 55 samples was technically replicated on two distinct slides, while performing dye swapping (Cy3 and Alexa) to estimate the dye intensity variation bias. After correcting for local background, raw intensity values were both log2 transformed and normalized using the regional LOWESS method implemented in the R/MANOVA software (KERR et al. 2000). We used a previously generated linkage map based on the same backcross individuals for which gene expression was measured. eQTL mapping was performed with QTL Cartographer.

Dataset Information

Describing historical habitat use of a native fish-Cisco (Coregonus artedi)-in Lake Michigan between 1930 and 1932.

Publications

Describing historical habitat use of a native fish-Cisco (Coregonus artedi)-in Lake Michigan between 1930 and 1932.

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