Incremental Approach for Automatic Generation of Domain-Specific Sentiment Lexicon
Ontology highlight
ABSTRACT:
SUBMITTER: Jose J
PROVIDER: S-EPMC7148022 | biostudies-literature | 2020 Mar
REPOSITORIES: biostudies-literature
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Project description:With the rapid increase in social networks and blogs, the social media services are increasingly being used by online communities to share their views and experiences about a particular product, policy and event. Due to economic importance of these reviews, there is growing trend of writing user reviews to promote a product. Nowadays, users prefer online blogs and review sites to purchase products. Therefore, user reviews are considered as an important source of information in Sentiment Analysis (SA) applications for decision making. In this work, we exploit the wealth of user reviews, available through the online forums, to analyze the semantic orientation of words by categorizing them into +ive and -ive classes to identify and classify emoticons, modifiers, general-purpose and domain-specific words expressed in the public's feedback about the products. However, the un-supervised learning approach employed in previous studies is becoming less efficient due to data sparseness, low accuracy due to non-consideration of emoticons, modifiers, and presence of domain specific words, as they may result in inaccurate classification of users' reviews. Lexicon-enhanced sentiment analysis based on Rule-based classification scheme is an alternative approach for improving sentiment classification of users' reviews in online communities. In addition to the sentiment terms used in general purpose sentiment analysis, we integrate emoticons, modifiers and domain specific terms to analyze the reviews posted in online communities. To test the effectiveness of the proposed method, we considered users reviews in three domains. The results obtained from different experiments demonstrate that the proposed method overcomes limitations of previous methods and the performance of the sentiment analysis is improved after considering emoticons, modifiers, negations, and domain specific terms when compared to baseline methods.
| S-EPMC5322980 | biostudies-literature
Project description:Accurate measurement of B and T cell responses is a valuable tool to study autoimmunity, allergies, immunity to pathogens, and host-pathogen interactions and assist in the design and evaluation of T cell vaccines and immunotherapies. In this context, it is desirable to elucidate a method to select validated reference sets of epitopes to allow detection of T and B cells. However, the ever-growing information contained in the Immune Epitope Database (IEDB) and the differences in quality and subjects studied between epitope assays make this task complicated. In this study, we develop a novel method to automatically select reference epitope sets according to a categorization system employed by the IEDB. From the sets generated, three epitope sets (EBV, mycobacteria and dengue) were experimentally validated by detection of T cell reactivity ex vivo from human donors. Furthermore, a web application that will potentially be implemented in the IEDB was created to allow users the capacity to generate customized epitope sets.
| S-EPMC4629045 | biostudies-literature
Project description:BACKGROUND: The use of ontologies to control vocabulary and structure annotation has added value to genome-scale data, and contributed to the capture and re-use of knowledge across research domains. Gene Ontology (GO) is widely used to capture detailed expert knowledge in genomic-scale datasets and as a consequence has grown to contain many terms, making it unwieldy for many applications. To increase its ease of manipulation and efficiency of use, subsets called GO slims are often created by collapsing terms upward into more general, high-level terms relevant to a particular context. Creation of a GO slim currently requires manipulation and editing of GO by an expert (or community) familiar with both the ontology and the biological context. Decisions about which terms to include are necessarily subjective, and the creation process itself and subsequent curation are time-consuming and largely manual. RESULTS: Here we present an objective framework for generating customised ontology slims for specific annotated datasets, exploiting information latent in the structure of the ontology graph and in the annotation data. This framework combines ontology engineering approaches, and a data-driven algorithm that draws on graph and information theory. We illustrate this method by application to GO, generating GO slims at different information thresholds, characterising their depth of semantics and demonstrating the resulting gains in statistical power. CONCLUSIONS: Our GO slim creation pipeline is available for use in conjunction with any GO-annotated dataset, and creates dataset-specific, objectively defined slims. This method is fast and scalable for application to other biomedical ontologies.
| S-EPMC3098080 | biostudies-literature
Project description:There has been much work over the last century on optimization of the lexicon for efficient communication, with a particular focus on the form of words as an evolving balance between production ease and communicative accuracy. Zipf's law of abbreviation, the cross-linguistic trend for less-probable words to be longer, represents some of the strongest evidence the lexicon is shaped by a pressure for communicative efficiency. However, the various sounds that make up words do not all contribute the same amount of disambiguating information to a listener. Rather, the information a sound contributes depends in part on what specific lexical competitors exist in the lexicon. In addition, because the speech stream is perceived incrementally, early sounds in a word contribute on average more information than later sounds. Using a dataset of diverse languages, we demonstrate that, above and beyond containing more sounds, less-probable words contain sounds that convey more disambiguating information overall. We show further that this pattern tends to be strongest at word-beginnings, where sounds can contribute the most information.
| S-EPMC7323847 | biostudies-literature
Project description:In this work, we present a computationally efficient image-derived volume mesh generation approach for vasculatures that implements spatially varying patient-specific wall thickness with a novel inward extrusion of the wall surface mesh. Multi-domain vascular meshes with arbitrary numbers, locations, and patterns of both iliac bifurcations and thrombi can be obtained without the need to specify features or landmark points as input. In addition, the mesh output is coordinate-frame independent and independent of the image grid resolution with high dimensional accuracy and mesh quality, devoid of errors typically found in off-the-shelf image-based model generation workflows. The absence of deformable template models or Cartesian grid-based methods enables the present approach to be sufficiently robust to handle aneurysmatic geometries with highly irregular shapes, arterial branches nearly parallel to the image plane, and variable wall thickness. The assessment of the methodology was based on i) estimation of the surface reconstruction accuracy, ii) validation of the output mesh using an aneurysm phantom, and iii) benchmarking the volume mesh quality against other frameworks. For the phantom image dataset (pixel size 0.105 mm; slice spacing 0.7 mm; and mean wall thickness 1.401±0.120 mm), the average wall thickness in the mesh was 1.459±0.123 mm. The absolute error in average wall thickness was 0.060±0.036 mm, or about 8.6% of the largest image grid spacing (0.7 mm) and 4.36% of the actual mean wall thickness. Mesh quality metrics and the ability to reproduce regional variations of wall thickness were found superior to similar alternative frameworks.
| S-EPMC4492838 | biostudies-literature
Project description:BackgroundOnline reviews may act as a rich source of data to assess the quality of dental practices. Assessing the content and sentiment of reviews on a large scale is time consuming and expensive. Automation of the process of assigning sentiment to big data samples of reviews may allow for reviews to be used as Patient Reported Experience Measures for primary care dentistry.AimTo assess the reliability of three different online sentiment analysis tools (Amazon Comprehend DetectSentiment API (ACDAPI), Google and Monkeylearn) at assessing the sentiment of reviews of dental practices working on National Health Service contracts in the United Kingdom.MethodsA Python 3 script was used to mine 15800 reviews from 4803 unique dental practices on the NHS.uk websites between April 2018 -March 2019. A random sample of 270 reviews were rated by the three sentiment analysis tools. These reviews were rated by 3 blinded independent human reviewers and a pooled sentiment score was assigned. Kappa statistics and polychoric evalutaiton were used to assess the level of agreement. Disagreements between the automated and human reviewers were qualitatively assessed.ResultsThere was good agreement between the sentiment assigned to reviews by the human reviews and ACDAPI (k = 0.660). The Google (k = 0.706) and Monkeylearn (k = 0.728) showed slightly better agreement at the expense of usability on a massive dataset. There were 33 disagreements in rating between ACDAPI and human reviewers, of which n = 16 were due to syntax errors, n = 10 were due to misappropriation of the strength of conflicting emotions and n = 7 were due to a lack of overtly emotive language in the text.ConclusionsThere is good agreement between the sentiment of an online review assigned by a group of humans and by cloud-based sentiment analysis. This may allow the use of automated sentiment analysis for quality assessment of dental service provision in the NHS.
| S-EPMC8673612 | biostudies-literature
Project description:BackgroundCollaboration among investigators has become critical to scientific research. This includes ad hoc collaboration established through personal contacts as well as formal consortia established by funding agencies. Continued growth in online resources for scientific research and communication has promoted the development of highly networked research communities. Extending these networks globally requires identifying additional investigators in a given domain, profiling their research interests, and collecting current contact information. We present a novel strategy for building investigator networks dynamically and producing detailed investigator profiles using data available in PubMed abstracts.ResultsWe developed a novel strategy to obtain detailed investigator information by automatically parsing the affiliation string in PubMed records. We illustrated the results by using a published literature database in human genome epidemiology (HuGE Pub Lit) as a test case. Our parsing strategy extracted country information from 92.1% of the affiliation strings in a random sample of PubMed records and in 97.0% of HuGE records, with accuracies of 94.0% and 91.0%, respectively. Institution information was parsed from 91.3% of the general PubMed records (accuracy 86.8%) and from 94.2% of HuGE PubMed records (accuracy 87.0). We demonstrated the application of our approach to dynamic creation of investigator networks by creating a prototype information system containing a large database of PubMed abstracts relevant to human genome epidemiology (HuGE Pub Lit), indexed using PubMed medical subject headings converted to Unified Medical Language System concepts. Our method was able to identify 70-90% of the investigators/collaborators in three different human genetics fields; it also successfully identified 9 of 10 genetics investigators within the PREBIC network, an existing preterm birth research network.ConclusionWe successfully created a web-based prototype capable of creating domain-specific investigator networks based on an application that accurately generates detailed investigator profiles from PubMed abstracts combined with robust standard vocabularies. This approach could be used for other biomedical fields to efficiently establish domain-specific investigator networks.
| S-EPMC1931433 | biostudies-literature
Project description:Computational Sentiment Analysis involves the automation of human emotion comprehension by categorizing sentiments as positive, negative, or neutral. In the contemporary digital environment, the extensive volume of social media content presents significant challenges for manual analysis, thereby necessitating the development and implementation of automated analytical tools. To address the limitations of existing techniques, which heavily rely on machine learning and extensive dataset pre-training, we propose an innovative unsupervised approach for sentiment classification. This novel methodology is grounded in game theory concepts, particularly the population game model, offering a promising solution by circumventing the need for extensive training procedures. We extract two textual features from review comments, namely context score and emotion score. Leveraging lexicon databases and numeric scores, this cognitive mathematical framework is language-independent. Competitive results are demonstrated across various domains (hotels, restaurants, electronic devices, etc.), and the efficacy of the proposed work is validated in two languages (English and Hindi). The highest accuracy recorded for the English domain dataset is 89%, while electronic Hindi reviews attain an 84% accuracy rate. The proposed model exhibits domain and language independence, validated through statistical analyses confirming the significance of the findings. The framework demonstrates noteworthy rationality and coherence in its outcomes.
| S-EPMC11375044 | biostudies-literature
Project description:The objective definition of footprint margins poses a central problem in ichnology. The transition from the footprint to the surrounding sediment is often continuous, and the footprint wall complex, requiring interpolation, approximation, and a priori assumptions about trackmaker anatomy to arrive at feasible interpretations of footprint shapes. The degree of subjectivity of such interpretations is substantial, and outlines produced by separate researchers can differ greatly. As a consequence, statistical shape analysis, regardless if based on linear and angular measurements or on the shape as a whole, are neither fully repeatable nor objective. Here I present an algorithm implemented in the programming environment R that is able to generate continuous footprint outlines based on three-dimensional models-fully automatically, objectively, and repeatable. The approach, which is based on contour lines extracted from the model, traces the outline at the point where the slope of the track wall is steepest. An option for automatic landmark placement is implemented for tridactyl footprints. A case study was carried out on 13 footprints of a single trackway of a theropod trackmaker from the Lower Cretaceous of Münchehagen, Germany. Analysis of the landmark coordinates returned by the script did reproduce statistical results published in an earlier study that was based on human-made interpretative drawings, demonstrating the applicability of the present method for the objective and quantitative shape analysis of tracks. Although faint anatomical details are not always recorded and features not related to the foot anatomy may be included, the generated outlines tend to correspond with human-made interpretative drawings regarding the overall shape. While not suited as a full replacement of interpretative drawings, these generated outlines may be used as an objective basis for such interpretations.
| S-EPMC6599673 | biostudies-literature
Project description:Machine learning techniques that rely on textual features or sentiment lexicons can lead to erroneous sentiment analysis. These techniques are especially vulnerable to domain-related difficulties, especially when dealing in Big data. In addition, labeling is time-consuming and supervised machine learning algorithms often lack labeled data. Transfer learning can help save time and obtain high performance with fewer datasets in this field. To cope this, we used a transfer learning-based Multi-Domain Sentiment Classification (MDSC) technique. We are able to identify the sentiment polarity of text in a target domain that is unlabeled by looking at reviews in a labelled source domain. This research aims to evaluate the impact of domain adaptation and measure the extent to which transfer learning enhances sentiment analysis outcomes. We employed transfer learning models BERT, RoBERTa, ELECTRA, and ULMFiT to improve the performance in sentiment analysis. We analyzed sentiment through various transformer models and compared the performance of LSTM and CNN. The experiments are carried on five publicly available sentiment analysis datasets, namely Hotel Reviews (HR), Movie Reviews (MR), Sentiment140 Tweets (ST), Citation Sentiment Corpus (CSC), and Bioinformatics Citation Corpus (BCC), to adapt multi-target domains. The performance of numerous models employing transfer learning from diverse datasets demonstrating how various factors influence the outputs.
| S-EPMC10984522 | biostudies-literature