Dataset Information

Low Long Terminal Repeat (LTR)-Retrotransposon Expression in Leaves of the Marine Phanerogam Posidonia Oceanica L.

ABSTRACT: Seagrasses as Posidonia oceanica reproduce mostly by vegetative propagation, which can reduce genetic variability within populations. Since, in clonally propagated species, insurgence of genetic variability can be determined by the activity of transposable elements, we have estimated the activity of such repeat elements by measuring their expression level in the leaves of plants from a Mediterranean site, for which Illumina complementary DNA (cDNA) sequence reads (produced from RNAs isolated by leaves of plants from deep and shallow meadows) were publicly available. Firstly, we produced a collection of retrotransposon-related sequences and then mapped Illumina cDNA reads onto these sequences. With this approach, it was evident that Posidonia retrotransposons are, in general, barely expressed; only nine elements resulted transcribed at levels comparable with those of reference genes encoding tubulins and actins. Differences in transcript abundance were observed according to the superfamily and the lineage to which the retrotransposons belonged. Only small differences were observed between retrotransposon expression levels in leaves of shallow and deep Posidonia meadow stands, whereas one TAR/Tork element resulted differentially expressed in deep plants exposed to heat. It can be concluded that, in P. oceanica, the contribution of retrotransposon activity to genetic variability is reduced, although the nine specific active elements could actually produce new structural variations.

SUBMITTER: Vangelisti A

PROVIDER: S-EPMC7151569 | biostudies-literature | 2020 Mar

REPOSITORIES: biostudies-literature

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Low Long Terminal Repeat (LTR)-Retrotransposon Expression in Leaves of the Marine Phanerogam <i>Posidonia Oceanica</i> L.

Vangelisti Alberto A Mascagni Flavia F Usai Gabriele G Natali Lucia L Giordani Tommaso T Cavallini Andrea A

Life (Basel, Switzerland) 20200324 3

Seagrasses as <i>Posidonia oceanica</i> reproduce mostly by vegetative propagation, which can reduce genetic variability within populations. Since, in clonally propagated species, insurgence of genetic variability can be determined by the activity of transposable elements, we have estimated the activity of such repeat elements by measuring their expression level in the leaves of plants from a Mediterranean site, for which Illumina complementary DNA (cDNA) sequence reads (produced from RNAs isola ...[more]

PMID: 32213979

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Project description:Simple Summary The seagrass Posidonia oceanica is the most important marine phanerogam of the Mediterranean Sea due to its meadows’ complexity, persistence, and extension. These habitats provide a suite of ecosystem goods and services, being of primary importance in marine conservation. Despite their central role in the coastal ecology, P. oceanica meadows are undergoing overall deterioration and fragmentation in the basin mostly due to anthropogenic impacts at local to global scales. In the last decades, several management measures have been proposed aiming to improve the meadow health conditions, while the periodic monitoring of P. oceanica meadows allows for verifying their effectiveness. Here, we report the results of the monitoring of P. oceanica at Tremiti Islands Marine Protected Area (Adriatic Sea, Italy) carried out in 2003, 2015, and 2020. A general worsening was observed, particularly enhanced by direct anthropogenic impacts mostly related to anchoring practices, as well as by a certain level of sedimentation possibly deriving from coastal development. However, the identification of these impacts and the correct management of human activities to mitigate them produced positive results in a relatively short time span. Abstract Posidonia oceanica meadows are Mediterranean coastal habitats of great conservation importance. This study is focused on a meadow located at Tremiti Islands Marine Protected Area (Adriatic Sea, Italy), which was monitored in 2003, 2015, and 2020 to evaluate its health state over time in relation to coastal human activities, which have been highly affecting this MPA for the last 20 years. To assess any change in the physiognomy of the meadow, rhizome density, percentage coverage, and lower limit progressions and/or regression over time were evaluated by scuba diving, while the distribution and extension of the meadow were assessed through habitat mapping using a side-scan sonar. Moreover, phenological and lepidochronological analyses were performed on the collected rhizomes to assess the leaf area index (LAI, m2m−2) and the rhizome age (lepidochronological years). Our study showed a general deterioration of P. oceanica meadow from 2003 to 2020, with a significant reduction of its absolute and relative rhizome density and LAI at almost all sampling stations, absence of renovation of the meadow, and lower limit regression and overall worsening of the main conservation status indicators. However, appropriate management actions, such as the establishment of mooring buoy fields, supported the improvement of the P. oceanica status at the local scale with a significant increase in density and LAI and the presence of active stolonization processes, suggesting that mitigation actions can play a crucial role in the conservation of this habitat. On the contrary, local anthropogenic impacts, especially anchoring and coastal development, markedly affect the resilience of P. oceanica meadows to global stressors, such as climate change.

Dataset Information

Low Long Terminal Repeat (LTR)-Retrotransposon Expression in Leaves of the Marine Phanerogam Posidonia Oceanica L.

Publications

Low Long Terminal Repeat (LTR)-Retrotransposon Expression in Leaves of the Marine Phanerogam <i>Posidonia Oceanica</i> L.

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