Dataset Information

Genetic and signalling pathways of dry fruit size: targets for genome editing-based crop improvement.

ABSTRACT: Fruit is seed-bearing structures specific to angiosperm that form from the gynoecium after flowering. Fruit size is an important fitness character for plant evolution and an agronomical trait for crop domestication/improvement. Despite the functional and economic importance of fruit size, the underlying genes and mechanisms are poorly understood, especially for dry fruit types. Improving our understanding of the genomic basis for fruit size opens the potential to apply gene-editing technology such as CRISPR/Cas to modulate fruit size in a range of species. This review examines the genes involved in the regulation of fruit size and identifies their genetic/signalling pathways, including the phytohormones, transcription and elongation factors, ubiquitin-proteasome and microRNA pathways, G-protein and receptor kinases signalling, arabinogalactan and RNA-binding proteins. Interestingly, different plant taxa have conserved functions for various fruit size regulators, suggesting that common genome edits across species may have similar outcomes. Many fruit size regulators identified to date are pleiotropic and affect other organs such as seeds, flowers and leaves, indicating a coordinated regulation. The relationships between fruit size and fruit number/seed number per fruit/seed size, as well as future research questions, are also discussed.

SUBMITTER: Hussain Q

PROVIDER: S-EPMC7152616 | biostudies-literature | 2020 May

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Genetic and signalling pathways of dry fruit size: targets for genome editing-based crop improvement.

Hussain Quaid Q Shi Jiaqin J Scheben Armin A Zhan Jiepeng J Wang Xinfa X Liu Guihua G Yan Guijun G King Graham J GJ Edwards David D Wang Hanzhong H

Plant biotechnology journal 20200125 5

Fruit is seed-bearing structures specific to angiosperm that form from the gynoecium after flowering. Fruit size is an important fitness character for plant evolution and an agronomical trait for crop domestication/improvement. Despite the functional and economic importance of fruit size, the underlying genes and mechanisms are poorly understood, especially for dry fruit types. Improving our understanding of the genomic basis for fruit size opens the potential to apply gene-editing technology su ...[more]

PMID: 31850661

Similar Datasets

Project description:BACKGROUND:The Solanaceae are an economically important family of plants that include tobacco (Nicotiana tabacum L.), tomato, and potato. Drought is a major cause of crop losses. RESULTS:We have identified major changes in physiology, metabolites, mRNA levels, and promoter activities during the tobacco response to drought. We have classified these as potential components of core responses that may be common to many plant species or responses that may be family/species-specific features of the drought stress response in tobacco or the Solanaceae. In tobacco the largest increase in any metabolite was a striking 70-fold increase in 4-hydroxy-2-oxoglutaric acid (KHG) in roots that appears to be tobacco/Solanaceae specific. KHG is poorly characterized in plants but is broken down to pyruvate and glyoxylate after the E. coli SOS response to facilitate the resumption of respiration. A similar process in tobacco would represent a mechanism to restart respiration upon water availability after drought. At the mRNA level, transcription factor gene induction by drought also showed both core and species/family specific responses. Many Group IX Subgroup 3 AP2/ERF transcription factors in tobacco appear to play roles in nicotine biosynthesis as a response to herbivory, whereas their counterparts in legume species appear to play roles in drought responses. We observed apparent Solanaceae-specific drought induction of several Group IId WRKY genes. One of these, NtWRKY69, showed ABA-independent drought stress-inducible promoter activity that moved into the leaf through the vascular tissue and then eventually into the surrounding leaf cells. CONCLUSIONS:We propose components of a core metabolic response to drought stress in plants and also show that some major responses to drought stress at the metabolome and transcriptome levels are family specific. We therefore propose that the observed family-specific changes in metabolism are regulated, at least in part, by family-specific changes in transcription factor activity. We also present a list of potential targets for the improvement of Solanaceae drought responses.

Project description:Cereal crop species including bread wheat (Triticum aestivum L.), barley (Hordeum vulgare L.), rice (Oryza sativa L.), and maize (Zea mays L.) provide the bulk of human nutrition and agricultural products for industrial use. These four cereals are central to meet future demands of food supply for an increasing world population under a changing climate. A prerequisite for cereal crop production is the transition from vegetative to reproductive and grain-filling phases starting with flower initiation, a key developmental switch tightly regulated in all flowering plants. Although studies in the dicotyledonous model plant Arabidopsis thaliana build the foundations of our current understanding of plant phenology genes and regulation, the availability of genome assemblies with high-confidence sequences for rice, maize, and more recently bread wheat and barley, now allow the identification of phenology-associated gene orthologs in monocots. Together with recent advances in next-generation sequencing technologies, QTL analysis, mutagenesis, complementation analysis, and RNA interference, many phenology genes have been functionally characterized in cereal crops and conserved as well as functionally divergent genes involved in flowering were found. Epigenetic and other molecular regulatory mechanisms that respond to environmental and endogenous triggers create an enormous plasticity in flowering behavior among cereal crops to ensure flowering is only induced under optimal conditions. In this review, we provide a summary of recent discoveries of flowering time regulators with an emphasis on four cereal crop species (bread wheat, barley, rice, and maize), in particular, crop-specific regulatory mechanisms and genes. In addition, pleiotropic effects on agronomically important traits such as grain yield, impact on adaptation to new growing environments and conditions, genetic sequence-based selection and targeted manipulation of phenology genes, as well as crop growth simulation models for predictive crop breeding, are discussed.

Project description:In recent times, research attention is focusing on harnessing agricultural wastes for the production of value-added products. In this study, the valorization of Carica papaya (Pawpaw) fruit peels was evaluated for the production of quality organic fertilizer via anaerobic digestion (AD) while the effects of the fertilizer on maize crop were also assessed. Pawpaw peel was first pretreated by thermo-alkaline methods before AD and analyses were carried out using standard methods. The resulting digestate was rich in nutrients and was dewatered to form solid organic fertilizer rich in microbes and soil nutrients. When applied to maize plants, organic fertilizer showed a better effect on plant traits than NPK 15-15-15 fertilizer and without fertilizer application. These were more pronounced at mid to high organic fertilizer applications (30-to-60-kg nitrogen/hectare (kg N/ha)) rate. Comparison between the values obtained from the field experiments reveals that the organic fertilizer showed better performance in all parameters such as the number of leaves, leaf area, plant height, stem girth, total shoot, and root biomass, and length of the root. However, the chemical fertilizer outperformed all the organic fertilizer applied rates in the average highest size of the corn ear by 1.4%. After harvesting, nutrient elements were found to have bioaccumulated in plant organs (leaves, stem, and root) with the highest values being 29.7 mg/L for nitrogen in the leaf and this value was reported from the experiment with 50 kg N/ha. For phosphorus and potassium, the highest concentrations of 7.05 and 8.4 mg/L were recorded in the plant' stem of the experiment with 50 kg N/ha. All the treated soils recorded an increase in values of all nutrient elements over the control with the highest values recorded in the experiment with 60 kg N/ha. In soil with 60 kg N/ha, the nitrogen, phosphorus, and potassium increased by 28, 40, and 22% respectively over the chemical fertilizer applied experiment while different levels of increases were also recorded for all other macro and microelements in all the experiments. Thus, agricultural practices by using anaerobic digestates as organic fertilizers is a sustainable method to overcome the dependence on inorganic fertilizers high rate.

Dataset Information

Genetic and signalling pathways of dry fruit size: targets for genome editing-based crop improvement.

Publications

Genetic and signalling pathways of dry fruit size: targets for genome editing-based crop improvement.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure