Gapsplit: efficient random sampling for non-convex constraint-based models.

ABSTRACT:

Summary

Gapsplit generates random samples from convex and non-convex constraint-based models by targeting under-sampled regions of the solution space. Gapsplit provides uniform coverage of linear, mixed-integer and general non-linear models.

Availability and implementation

Python and Matlab source code are freely available at http://jensenlab.net/tools.

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Keaty TC 

PROVIDER: S-EPMC7178416 | biostudies-literature | 2020 Apr

REPOSITORIES: biostudies-literature