CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.
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ABSTRACT:
SUBMITTER: Marcelino VR
PROVIDER: S-EPMC7189439 | biostudies-literature | 2020 Apr
REPOSITORIES: biostudies-literature
Publications
CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.
Marcelino Vanessa R VR Clausen Philip T L C PTLC Buchmann Jan P JP Wille Michelle M Iredell Jonathan R JR Meyer Wieland W Lund Ole O Sorrell Tania C TC Holmes Edward C EC
Genome biology 20200428 1
There is an increasing demand for accurate and fast metagenome classifiers that can not only identify bacteria, but all members of a microbial community. We used a recently developed concept in read mapping to develop a highly accurate metagenomic classification pipeline named CCMetagen. The pipeline substantially outperforms other commonly used software in identifying bacteria and fungi and can efficiently use the entire NCBI nucleotide collection as a reference to detect species with incomplet ...[more]
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