Dataset Information

Prokaryotic Diversity and Composition of Sediments From Prydz Bay, the Antarctic Peninsula Region, and the Ross Sea, Southern Ocean.

ABSTRACT: The V3-V4 hypervariable regions of the 16S ribosomal RNA gene were analyzed to assess prokaryotic diversity and community compositions within 19 surface sediment samples collected from three different regions (depth: 250-3,548 m) of Prydz Bay, the Antarctic Peninsula region, and the Ross Sea. In our results, we characterized 1,079,709 clean tag sequences representing 43,227 operational taxonomic units (OTUs, 97% similarity). The prokaryotic community distribution exhibited obvious geographical differences, and the sequences formed three distinct clusters according to the samples' origins. In general, the biodiversity of Prydz Bay was higher than those of the Antarctic Peninsula region and the Ross Sea, and there were similar prokaryotic communities in different geographic locations. The most dominant clades in the prokaryotic communities were Proteobacteria, Bacteroidetes, Thaumarchaeota, Oxyphotobacteria, Deinococcus-Thermus, Firmicutes, Acidobacteria, Fusobacteria, and Planctomycetes, but unique prokaryotic community compositions were found in each of the sampling regions. Our results also demonstrated that the prokaryotic diversity and community distribution were mainly influenced by geographical and physicochemical factors, such as Zn, V, Na, K, water depth, and especially geographical distance (longitude variation of sample location) and Ba ion content. Moreover, geochemical factors such as nutrient contents (TC, P, and Ca) also played important roles in prokaryotic diversity and community distribution. This represents the first report that Ba ion content has an obvious effect on prokaryotic diversity and community distribution in Southern Ocean sediments.

SUBMITTER: Li J

PROVIDER: S-EPMC7198716 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Prokaryotic Diversity and Composition of Sediments From Prydz Bay, the Antarctic Peninsula Region, and the Ross Sea, Southern Ocean.

Li Jiang J Gu Xiaoqian X Gui Yuanyuan Y

Frontiers in microbiology 20200428

The V3-V4 hypervariable regions of the 16S ribosomal RNA gene were analyzed to assess prokaryotic diversity and community compositions within 19 surface sediment samples collected from three different regions (depth: 250-3,548 m) of Prydz Bay, the Antarctic Peninsula region, and the Ross Sea. In our results, we characterized 1,079,709 clean tag sequences representing 43,227 operational taxonomic units (OTUs, 97% similarity). The prokaryotic community distribution exhibited obvious geographical d ...[more]

PMID: 32411115

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Project description:Organic carbon fixed by photosynthesis of phytoplankton during the polar growing period could be important for their survival and consumers during the long polar night. Differences in biochemical traits of phytoplankton between ice-free and polar night periods were investigated in biweekly water samples obtained at the Korean "Jang Bogo Station" located in Terra Nova Bay, Antarctica. The average concentration of total Chl-a from phytoplankton dominated by micro-sized species from the entire sampling period was 0.32 μg L-1 (SD = ± 0.88 μg L-1), with the highest concentration of 4.29 μg L-1 in February and the lowest concentration of 0.01 μg L-1 during the ice-covered polar night (April-October) in 2015. The highest protein concentration coincided with the peak Chl-a concentration in February and decreased rapidly relative to the carbohydrate and lipid concentrations in the early part of polar night. Among the different biochemical components, carbohydrates were the predominant constituent, accounting for 69% (SD = ± 14%) of the total particulate organic matter (POM) during the entire study period. The carbohydrate contributions to the total POM markedly increased from 39 ± 8% during the ice-free period to 73 ± 9% during the polar night period. In comparison, while we found a significant negative correlation (r 2 = 0.92, p < 0.01) between protein contributions and carbohydrate contributions, lipid contributions did not show any particular trend with relatively small temporal variations during the entire observation period. The substantial decrease in the average weight ratio of proteins to carbohydrates from the ice-free period (mean ± SD = 1.0 ± 0.3) to the ice-covered period (mean ± SD = 0.1 ± 0.1) indicates a preferential loss of nitrogen-based proteins compared to carbohydrates during the polar night period. Overall, the average food material (FM) concentration and calorific contents of FM in this study were within the range reported previously from the Southern Ocean. The results from this study may serve as important background data for long-term monitoring of the regional and interannual variations in the physiological state and biochemical compositions of phytoplankton resulting from future climate change in Antarctica.

Dataset Information

Prokaryotic Diversity and Composition of Sediments From Prydz Bay, the Antarctic Peninsula Region, and the Ross Sea, Southern Ocean.

Publications

Prokaryotic Diversity and Composition of Sediments From Prydz Bay, the Antarctic Peninsula Region, and the Ross Sea, Southern Ocean.

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