Project description:Abstract Background: Glioma accounts for around 27% of all primary brain tumors and is responsible for approximately 13,000 cancer-related deaths in the US each year. Glioma tumors can be broadly classified into glioblastoma (GBM) and lower-grade non-GBM. Typically gliomas have a poor prognosis irrespective of medical care, with the most common form, GBM, having a five-year survival rate of only 5%. While genome-wide association studies (GWAS) have transformed our understanding of glioma susceptibility, individual studies have had limited power to identify risk loci. Methods: We performed the largest GWAS in glioma to date, comprising a meta-analysis of existing GWAS (6,405 cases, 14,100 controls) as well as new GWAS from the Glioma International Case Control Consortium (GICC; 4,572 cases and 3,286 controls) and University of California, San Francisco (UCSF)-Mayo (1,519 cases, 804 controls), totalling 12,496 cases and 18,190 controls. Results: We identified five new loci for GBM at 1p31.3 (rs12752552, near JAK1, P=2.04?×?10–9, odds ratio (OR)=1.22), 11q14.1 (rs11233250, P=9.95?×?10-10, OR=1.24), 16p13.3 (rs2562152, near MPG, P=1.93x10-8, OR=1.21), 16q12.1 (rs10852606, HEATR3, P=1.29?×?10–11, OR=1.18), 22q13.1 (rs2235573, P=1.76?×?10-10, OR=1.15) and eight for non-GBM at 1q32.1 (rs4252707, MDM4, P=3.34?×?10–9, OR=1.19), 1q44 (rs12076373, AKT3, P=2.63?×?10-10, OR=1.23), 2q33.3 (rs7572263, near IDH1, P=2.18?×?10-10, OR=1.20), 3p14.1 (rs11706832, LRIG1l, P=7.66?×?10–9, OR=1.15), 10q24.33 (rs11598018, OBFC1, P=3.39?×?10–8, OR=1.14), 11q21 (rs7107785, P=3.87?×?10-10, OR=1.16), 14q12 (rs10131032, P=5.07x10-11, OR=1.33) and 16p13.3 (rs3751667, P=2.61?×?10–9, OR=1.18). Case-only analyses confirmed the specificity of 11q14.1, 16p13.3 and 22q13.1 associations for GBM and 1q44, 2q33.3, 3p14.1, 11q21 and 14q12 for non-GBM tumors. In the combined meta-analysis, among previously published glioma risk SNPs, those for all glioma at 17p13.1 (TP53), GBM at 5p15.33 (TERT), 7p11.2 (EGFR), 9p21.3 (CDKN2B-AS1) and 20q13.33 (RTEL1) and for non-GBM at 8q24.21 (CCDC26), 11q23.2, 11q23.3 (PHLDB1) and 15q24.2 (ETFA) showed even greater evidence for association. SNPs at 10q25.2 and 12q12.1 for non-GBM tumors retained genome-wide significance (i.e. P<5.0x10-8). Associations at the previously reported 3q26.2 (near TERC) and 12q23.33 (POLR3B) loci for GBM did not retain statistical significance. Conclusions: Our findings substantiate genetic susceptibility to GBM and non-GBM being highly distinct, consistent with their distinctive molecular profiles presumably resulting from different etiological pathways. Functional analyses should lead to further insights into the biological basis of the different glioma histologies. Such information can inform gene discovery initiatives and therefore have a measurable impact on the successful development of new therapeutic agents.
| S-EPMC5463682 | biostudies-literature