Dataset Information

A Multi-Clustering Algorithm to Solve Driving Cycle Prediction Problems Based on Unbalanced Data Sets: A Chinese Case Study.

ABSTRACT: Vehicle evaluation parameters, which are increasingly of concern for governments and consumers, quantify performance indicators, such as vehicle performance, emissions, and driving experience to help guide consumers in purchasing cars. While past approaches for driving cycle prediction have been proven effective and used in many countries, these algorithms are difficult to use in China with its complex traffic environment and increasingly high frequency of traffic jams. Meanwhile, we found that the vehicle dataset used by the driving cycle prediction problem is usually unbalanced in real cases, which means that there are more medium and high speed samples and very few samples at low and ultra-high speeds. If the ordinary clustering algorithm is directly applied to the unbalanced data, it will have a huge impact on the performance to build driving cycle maps, and the parameters of the map will deviate considerable from actual ones. In order to address these issues, this paper propose a novel driving cycle map algorithm framework based on an ensemble learning method named multi-clustering algorithm, to improve the performance of traditional clustering algorithms on unbalanced data sets. It is noteworthy that our model framework can be easily extended to other complicated structure areas due to its flexible modular design and parameter configuration. Finally, we tested our method based on actual traffic data generated in Fujian Province in China. The results prove the multi-clustering algorithm has excellent performance on our dataset.

SUBMITTER: Wu Y

PROVIDER: S-EPMC7248886 | biostudies-literature | 2020 Apr

REPOSITORIES: biostudies-literature

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Publications

A Multi-Clustering Algorithm to Solve Driving Cycle Prediction Problems Based on Unbalanced Data Sets: A Chinese Case Study.

Wu Yuewei Y Zhang Wutong W Zhang Long L Qiao Yuanyuan Y Yang Jie J Cheng Cheng C

Sensors (Basel, Switzerland) 20200425 9

Vehicle evaluation parameters, which are increasingly of concern for governments and consumers, quantify performance indicators, such as vehicle performance, emissions, and driving experience to help guide consumers in purchasing cars. While past approaches for driving cycle prediction have been proven effective and used in many countries, these algorithms are difficult to use in China with its complex traffic environment and increasingly high frequency of traffic jams. Meanwhile, we found that ...[more]

PMID: 32344855

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Project description:BackgroundIn the post-genomic era, the rapid increase in high-throughput data calls for computational tools capable of integrating data of diverse types and facilitating recognition of biologically meaningful patterns within them. For example, protein-protein interaction data sets have been clustered to identify stable complexes, but scientists lack easily accessible tools to facilitate combined analyses of multiple data sets from different types of experiments. Here we present clusterMaker, a Cytoscape plugin that implements several clustering algorithms and provides network, dendrogram, and heat map views of the results. The Cytoscape network is linked to all of the other views, so that a selection in one is immediately reflected in the others. clusterMaker is the first Cytoscape plugin to implement such a wide variety of clustering algorithms and visualizations, including the only implementations of hierarchical clustering, dendrogram plus heat map visualization (tree view), k-means, k-medoid, SCPS, AutoSOME, and native (Java) MCL.ResultsResults are presented in the form of three scenarios of use: analysis of protein expression data using a recently published mouse interactome and a mouse microarray data set of nearly one hundred diverse cell/tissue types; the identification of protein complexes in the yeast Saccharomyces cerevisiae; and the cluster analysis of the vicinal oxygen chelate (VOC) enzyme superfamily. For scenario one, we explore functionally enriched mouse interactomes specific to particular cellular phenotypes and apply fuzzy clustering. For scenario two, we explore the prefoldin complex in detail using both physical and genetic interaction clusters. For scenario three, we explore the possible annotation of a protein as a methylmalonyl-CoA epimerase within the VOC superfamily. Cytoscape session files for all three scenarios are provided in the Additional Files section.ConclusionsThe Cytoscape plugin clusterMaker provides a number of clustering algorithms and visualizations that can be used independently or in combination for analysis and visualization of biological data sets, and for confirming or generating hypotheses about biological function. Several of these visualizations and algorithms are only available to Cytoscape users through the clusterMaker plugin. clusterMaker is available via the Cytoscape plugin manager.

Project description:Prediction problems in biomedical sciences are generally quite difficult, partially due to incomplete knowledge of how the phenomenon of interest is influenced by the variables and measurements used for prediction, as well as a lack of consensus regarding the ideal predictor(s) for specific problems. In these situations, a powerful approach to improving prediction performance is to construct ensembles that combine the outputs of many individual base predictors, which have been successful for many biomedical prediction tasks. Moreover, selecting a parsimonious ensemble can be of even greater value for biomedical sciences, where it is not only important to learn an accurate predictor, but also to interpret what novel knowledge it can provide about the target problem. Ensemble selection is a promising approach for this task because of its ability to select a collectively predictive subset, often a relatively small one, of all input base predictors. One of the most well-known algorithms for ensemble selection, CES (Caruana et al.'s Ensemble Selection), generally performs well in practice, but faces several challenges due to the difficulty of choosing the right values of its various parameters. Since the choices made for these parameters are usually ad-hoc, good performance of CES is difficult to guarantee for a variety of problems or datasets. To address these challenges with CES and other such algorithms, we propose a novel heterogeneous ensemble selection approach based on the paradigm of reinforcement learning (RL), which offers a more systematic and mathematically sound methodology for exploring the many possible combinations of base predictors that can be selected into an ensemble. We develop three RL-based strategies for constructing ensembles and analyze their results on two unbalanced computational genomics problems, namely the prediction of protein function and splice sites in eukaryotic genomes. We show that the resultant ensembles are indeed substantially more parsimonious as compared to the full set of base predictors, yet still offer almost the same classification power, especially for larger datasets. The RL ensembles also yield a better combination of parsimony and predictive performance as compared to CES.

Dataset Information

A Multi-Clustering Algorithm to Solve Driving Cycle Prediction Problems Based on Unbalanced Data Sets: A Chinese Case Study.

Publications

A Multi-Clustering Algorithm to Solve Driving Cycle Prediction Problems Based on Unbalanced Data Sets: A Chinese Case Study.

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