Dataset Information

Machine Learning for Phone-Based Relationship Estimation: The Need to Consider Population Heterogeneity.

ABSTRACT: Estimating the category and quality of interpersonal relationships from ubiquitous phone sensor data matters for studying mental well-being and social support. Prior work focused on using communication volume to estimate broad relationship categories, often with small samples. Here we contextualize communications by combining phone logs with demographic and location data to predict interpersonal relationship roles on a varied sample population using automated machine learning methods, producing better performance (F1 = 0.68) than using communication features alone (F1 = 0.62). We also explore the effect of age variation in the underlying training sample on interpersonal relationship prediction and find that models trained on younger subgroups, which is popular in the field via student participation and recruitment, generalize poorly to the wider population. Our results not only illustrate the value of using data across demographics, communication patterns and semantic locations for relationship prediction, but also underscore the importance of considering population heterogeneity in phone-based personal sensing studies.

SUBMITTER: Liu T

PROVIDER: S-EPMC7265570 | biostudies-literature | 2019 Dec

REPOSITORIES: biostudies-literature

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Publications

Machine Learning for Phone-Based Relationship Estimation: The Need to Consider Population Heterogeneity.

Liu Tony T Nicholas Jennifer J Theilig Max M MM Guntuku Sharath C SC Kording Konrad K Mohr David C DC Ungar Lyle L

Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies 20191201 4

Estimating the category and quality of interpersonal relationships from ubiquitous phone sensor data matters for studying mental well-being and social support. Prior work focused on using communication volume to estimate broad relationship categories, often with small samples. Here we contextualize communications by combining phone logs with demographic and location data to predict interpersonal relationship roles on a varied sample population using automated machine learning methods, producing ...[more]

PMID: 32490330

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Project description:Obesity is associated with changes in the plasma lipids. Although simple lipid quantification is routinely used, plasma lipids are rarely investigated at the level of individual molecules. We aimed at predicting different measures of obesity based on the plasma lipidome in a large population cohort using advanced machine learning modeling. A total of 1,061 participants of the FINRISK 2012 population cohort were randomly chosen, and the levels of 183 plasma lipid species were measured in a novel mass spectrometric shotgun approach. Multiple machine intelligence models were trained to predict obesity estimates, i.e., body mass index (BMI), waist circumference (WC), waist-hip ratio (WHR), and body fat percentage (BFP), and validated in 250 randomly chosen participants of the Malmö Diet and Cancer Cardiovascular Cohort (MDC-CC). Comparison of the different models revealed that the lipidome predicted BFP the best (R2 = 0.73), based on a Lasso model. In this model, the strongest positive and the strongest negative predictor were sphingomyelin molecules, which differ by only 1 double bond, implying the involvement of an unknown desaturase in obesity-related aberrations of lipid metabolism. Moreover, we used this regression to probe the clinically relevant information contained in the plasma lipidome and found that the plasma lipidome also contains information about body fat distribution, because WHR (R2 = 0.65) was predicted more accurately than BMI (R2 = 0.47). These modeling results required full resolution of the lipidome to lipid species level, and the predicting set of biomarkers had to be sufficiently large. The power of the lipidomics association was demonstrated by the finding that the addition of routine clinical laboratory variables, e.g., high-density lipoprotein (HDL)- or low-density lipoprotein (LDL)- cholesterol did not improve the model further. Correlation analyses of the individual lipid species, controlled for age and separated by sex, underscores the multiparametric and lipid species-specific nature of the correlation with the BFP. Lipidomic measurements in combination with machine intelligence modeling contain rich information about body fat amount and distribution beyond traditional clinical assays.

Project description:BackgroundThe virtual screening of large compound databases is an important application of structural-activity relationship models. Due to the high structural diversity of these data sets, it is impossible for machine learning based QSAR models, which rely on a specific training set, to give reliable results for all compounds. Thus, it is important to consider the subset of the chemical space in which the model is applicable. The approaches to this problem that have been published so far mostly use vectorial descriptor representations to define this domain of applicability of the model. Unfortunately, these cannot be extended easily to structured kernel-based machine learning models. For this reason, we propose three approaches to estimate the domain of applicability of a kernel-based QSAR model.ResultsWe evaluated three kernel-based applicability domain estimations using three different structured kernels on three virtual screening tasks. Each experiment consisted of the training of a kernel-based QSAR model using support vector regression and the ranking of a disjoint screening data set according to the predicted activity. For each prediction, the applicability of the model for the respective compound is quantitatively described using a score obtained by an applicability domain formulation. The suitability of the applicability domain estimation is evaluated by comparing the model performance on the subsets of the screening data sets obtained by different thresholds for the applicability scores. This comparison indicates that it is possible to separate the part of the chemspace, in which the model gives reliable predictions, from the part consisting of structures too dissimilar to the training set to apply the model successfully. A closer inspection reveals that the virtual screening performance of the model is considerably improved if half of the molecules, those with the lowest applicability scores, are omitted from the screening.ConclusionThe proposed applicability domain formulations for kernel-based QSAR models can successfully identify compounds for which no reliable predictions can be expected from the model. The resulting reduction of the search space and the elimination of some of the active compounds should not be considered as a drawback, because the results indicate that, in most cases, these omitted ligands would not be found by the model anyway.

Dataset Information

Machine Learning for Phone-Based Relationship Estimation: The Need to Consider Population Heterogeneity.

Publications

Machine Learning for Phone-Based Relationship Estimation: The Need to Consider Population Heterogeneity.

Similar Datasets

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