Unknown

Dataset Information

0

Genome sequence analysis of a Helicoverpa armigera single nucleopolyhedrovirus (HearNPV-TR) isolated from Heliothis peltigera in Turkey.


ABSTRACT: The entire genome of Helicoverpa armigera single nucleopolyhedrovirus (HearNPV-TR) was sequenced, and compared to genomes of other existing isolates. HearNPV-TR genome is 130.691 base pairs with a 38.9% G+C content and has 137 open reading frames (ORFs) of ? 150 nucleotides. Five homologous repeated sequences (hrs) and two baculovirus repeated ORFs (bro-a and bro-b) were identified. Phylogenetic analysis showed that HearNPV-TR is closer to HaSNPV-C1, HaSNPV-G4, HaSNPV-AU and HasNPV. However, there are significant differences in hr3, hr5 regions and in bro-a gene. Pairwise Kimura-2 parameter analysis of 38 core genes sequences of HearNPV-TR and other Helicoverpa NPVs showed that the genetic distances for these sequences were below 0.015 substitutions/site. Genomic differences as revealed by restriction profiles indicated that hr3, hr5 regions and bro-a gene may play a role in the virulence of HearNPV-TR.

SUBMITTER: Eroglu GB 

PROVIDER: S-EPMC7292396 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

altmetric image

Publications

Genome sequence analysis of a Helicoverpa armigera single nucleopolyhedrovirus (HearNPV-TR) isolated from Heliothis peltigera in Turkey.

Eroglu Gozde Busra GB   Inan Cihan C   Nalcacioglu Remziye R   Demirbag Zihni Z  

PloS one 20200612 6


The entire genome of Helicoverpa armigera single nucleopolyhedrovirus (HearNPV-TR) was sequenced, and compared to genomes of other existing isolates. HearNPV-TR genome is 130.691 base pairs with a 38.9% G+C content and has 137 open reading frames (ORFs) of ≥ 150 nucleotides. Five homologous repeated sequences (hrs) and two baculovirus repeated ORFs (bro-a and bro-b) were identified. Phylogenetic analysis showed that HearNPV-TR is closer to HaSNPV-C1, HaSNPV-G4, HaSNPV-AU and HasNPV. However, the  ...[more]

Similar Datasets

| S-EPMC6823914 | biostudies-literature
| S-EPMC5377868 | biostudies-literature
| S-EPMC8193389 | biostudies-literature
| PRJNA188063 | ENA
| PRJNA69613 | ENA
| S-EPMC4582581 | biostudies-literature
| S-EPMC4621414 | biostudies-literature
| S-EPMC4524161 | biostudies-literature
| PRJNA232742 | ENA
| S-EPMC4463514 | biostudies-literature