Dataset Information

Tuning Enzyme Activity for Nonaqueous Solvents: Engineering an Enantioselective "Michaelase" for Catalysis in High Concentrations of Ethanol.

ABSTRACT: Enzymes have evolved to function under aqueous conditions and may not exhibit features essential for biocatalytic application, such as the ability to function in high concentrations of an organic solvent. Consequently, protein engineering is often required to tune an enzyme for catalysis in non-aqueous solvents. In this study, we have used a collection of nearly all single mutants of 4-oxalocrotonate tautomerase, which promiscuously catalyzes synthetically useful Michael-type additions of acetaldehyde to various nitroolefins, to investigate the effect of each mutation on the ability of this enzyme to retain its "Michaelase" activity in elevated concentrations of ethanol. Examination of this mutability landscape allowed the identification of two hotspot positions, Ser30 and Ala33, at which mutations are beneficial for catalysis in high ethanol concentrations. The "hotspot" position Ala33 was then randomized in a highly enantioselective, but ethanol-sensitive 4-OT variant (L8F/M45Y/F50A) to generate an improved enzyme variant (L8F/A33I/M45Y/F50A) that showed great ethanol stability and efficiently catalyzes the enantioselective addition of acetaldehyde to nitrostyrene in 40?% ethanol (permitting high substrate loading) to give the desired ?-nitroaldehyde product in excellent isolated yield (89?%) and enantiopurity (ee=98?%). The presented work demonstrates the power of mutability-landscape-guided enzyme engineering for efficient biocatalysis in non-aqueous solvents.

SUBMITTER: Guo C

PROVIDER: S-EPMC7317446 | biostudies-literature | 2020 May

REPOSITORIES: biostudies-literature

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Tuning Enzyme Activity for Nonaqueous Solvents: Engineering an Enantioselective "Michaelase" for Catalysis in High Concentrations of Ethanol.

Guo Chao C Biewenga Lieuwe L Lubberink Max M van Merkerk Ronald R Poelarends Gerrit J GJ

Chembiochem : a European journal of chemical biology 20200218 10

Enzymes have evolved to function under aqueous conditions and may not exhibit features essential for biocatalytic application, such as the ability to function in high concentrations of an organic solvent. Consequently, protein engineering is often required to tune an enzyme for catalysis in non-aqueous solvents. In this study, we have used a collection of nearly all single mutants of 4-oxalocrotonate tautomerase, which promiscuously catalyzes synthetically useful Michael-type additions of acetal ...[more]

PMID: 31886617

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Project description:Water plays an important role in enzyme structure and function in aqueous media. That role becomes even more important when one focuses on enzymes in low water media. Here we present results from molecular dynamics simulations of surfactant-solubilized subtilisin BPN' in three organic solvents (octane, tetrahydrofuran, and acetonitrile) and in pure water. Trajectories from simulations are analyzed with a focus on enzyme structure, flexibility, and the details of enzyme hydration. The overall enzyme and backbone structures, as well as individual residue flexibility, do not show significant differences between water and the three organic solvents over a timescale of several nanoseconds currently accessible to large-scale molecular dynamics simulations. The key factor that distinguishes molecular-level details in different media is the partitioning of hydration water between the enzyme and the bulk solvent. The enzyme surface and the active site region are well hydrated in aqueous medium, whereas with increasing polarity of the organic solvent (octane --> tetrahydrofuran --> acetonitrile) the hydration water is stripped from the enzyme surface. Water stripping is accompanied by the penetration of tetrahydrofuran and acetonitrile molecules into crevices on the enzyme surface and especially into the active site. More polar organic solvents (tetrahydrofuran and acetonitrile) replace mobile and weakly bound water molecules in the active site and leave primarily the tightly bound water in that region. In contrast, the lack of water stripping in octane allows efficient hydration of the active site uniformly by mobile and weakly bound water and some structural water similar to that in aqueous solution. These differences in the active site hydration are consistent with the inverse dependence of enzymatic activity on organic solvent polarity and indicate that the behavior of hydration water on the enzyme surface and in the active site is an important determinant of biological function especially in low water media.

Project description:The properties of all electrolyte solutions, whether the solvent is aqueous or nonaqueous, are strongly dependent on the nature of the ions in solution. The consequences of these specific-ion effects are significant and manifest from biochemistry to battery technology. The "law of matching water affinities" (LMWA) has proven to be a powerful concept for understanding and predicting specific-ion effects in a wide range of systems, including the stability of proteins and colloids, solubility, the behavior of lipids, surfactants, and polyelectrolytes, and catalysis in water and ionic liquids. It provides a framework for considering how the ions of an electrolyte interact in manifestations of ion specificity and therefore represents a considerable conceptual advance on the Hofmeister or lyotropic series in understanding specific-ion effects. Underpinning the development of the law of matching water affinities were efforts to interpret the so-called "volcano plots". Volcano plots exhibit a stark inverted "V" shape trend for a range of electrolyte dependent solution properties when plotted against the difference in solvation energies of the ions that constitute the electrolyte. Here we test the hypothesis that volcano plots are also manifest in nonaqueous solvents in order to investigate whether the LMWA can be extended to nonaqueous solvents. First we examine the standard solvation energies of electrolytes in nonaqueous solvents for evidence of volcano trends and then extend this to include the solubility and the activity/osmotic coefficients of electrolytes, in order to explore real electrolyte concentrations. We find that with respect to the solvent volcano trends are universal, which brings into question the role of solvent affinity in the manifestation of specific-ion effects. We also show that the volcano trends are maintained when the ionic radii are used in place of the absolute solvation energies as the abscissa, thus showing that ion sizes, rather than the solvent affinities, fundamentally determine the manifestation of ion specificity. This leads us to propose that specific-ion effects across all solvents including water can be understood by considering the relative sizes of the anion and cation, provided the ions are spherical or tetrahedral. This is an extension of the LMWA to all solvents in which the "water affinity" is replaced with the relative size of the anion and cation.

Dataset Information

Tuning Enzyme Activity for Nonaqueous Solvents: Engineering an Enantioselective "Michaelase" for Catalysis in High Concentrations of Ethanol.

Publications

Tuning Enzyme Activity for Nonaqueous Solvents: Engineering an Enantioselective "Michaelase" for Catalysis in High Concentrations of Ethanol.

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