Dataset Information

Enabling reusability of plant phenomic datasets with MIAPPE 1.1.

ABSTRACT: Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardising data publication practices. This is particularly challenging in the plant phenotyping domain, due to its complexity and heterogeneity. We have produced the MIAPPE 1.1 release, which enhances the existing MIAPPE standard in coverage, to support perennial plants, in structure, through an explicit data model, and in clarity, through definitions and examples. We evaluated MIAPPE 1.1 by using it to express several heterogeneous phenotyping experiments in a range of different formats, to demonstrate its applicability and the interoperability between the various implementations. Furthermore, the extended coverage is demonstrated by the fact that one of the datasets could not have been described under MIAPPE 1.0. MIAPPE 1.1 marks a major step towards enabling plant phenotyping data reusability, thanks to its extended coverage, and especially the formalisation of its data model, which facilitates its implementation in different formats. Community feedback has been critical to this development, and will be a key part of ensuring adoption of the standard.

SUBMITTER: Papoutsoglou EA

PROVIDER: S-EPMC7317793 | biostudies-literature | 2020 Jul

REPOSITORIES: biostudies-literature

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Enabling reusability of plant phenomic datasets with MIAPPE 1.1.

Papoutsoglou Evangelia A EA Faria Daniel D Arend Daniel D Arnaud Elizabeth E Athanasiadis Ioannis N IN Chaves Inês I Coppens Frederik F Cornut Guillaume G Costa Bruno V BV Ćwiek-Kupczyńska Hanna H Droesbeke Bert B Finkers Richard R Gruden Kristina K Junker Astrid A King Graham J GJ Krajewski Paweł P Lange Matthias M Laporte Marie-Angélique MA Michotey Célia C Oppermann Markus M Ostler Richard R Poorter Hendrik H Ramı Rez-Gonzalez Ricardo R Ramšak Živa Ž Reif Jochen C JC Rocca-Serra Philippe P Sansone Susanna-Assunta SA Scholz Uwe U Tardieu François F Uauy Cristobal C Usadel Björn B Visser Richard G F RGF Weise Stephan S Kersey Paul J PJ Miguel Célia M CM Adam-Blondon Anne-Françoise AF Pommier Cyril C

The New phytologist 20200425 1

Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardising data publication practices. This is particularly challenging in the plant phenotyping domain, due to its complexity and heterogeneity. We have produced the MIAPPE 1.1 release, which enhances the existing MIAPPE standard in coverage, to support perennial plants, in structure, through an explicit data model, and in clarity, through definitions and examples. We evalua ...[more]

PMID: 32171029

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Dataset Information

Enabling reusability of plant phenomic datasets with MIAPPE 1.1.

Publications

Enabling reusability of plant phenomic datasets with MIAPPE 1.1.

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