APAlyzer: a bioinformatics package for analysis of alternative polyadenylation isoforms.
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ABSTRACT: Summary
Most eukaryotic genes produce alternative polyadenylation (APA) isoforms. APA is dynamically regulated under different growth and differentiation conditions. Here, we present a bioinformatics package, named APAlyzer, for examining 3'UTR APA, intronic APA and gene expression changes using RNA-seq data and annotated polyadenylation sites in the PolyA_DB database. Using APAlyzer and data from the GTEx database, we present APA profiles across human tissues.Availability and implementation
APAlyzer is freely available at https://bioconductor.org/packages/release/bioc/html/APAlyzer.html as an R/Bioconductor package.Supplementary information
Supplementary data are available at Bioinformatics online.
SUBMITTER: Wang R
PROVIDER: S-EPMC7320624 | biostudies-literature |
REPOSITORIES: biostudies-literature
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2022-08-26 | GSE149204 | GEO