Dataset Information

Toward Automated Inventory Modeling in Life Cycle Assessment: The Utility of Semantic Data Modeling to Predict Real-World Chemical Production.

ABSTRACT: A set of coupled semantic data models, i.e., ontologies, are presented to advance a methodology toward automated inventory modeling of chemical manufacturing in life cycle assessment. The cradle-to-gate life cycle inventory for chemical manufacturing is a detailed collection of the material and energy flows associated with a chemical's supply chain. Thus, there is a need to manage data describing both the lineage (or synthesis pathway) and processing conditions for a chemical. To this end, a Lineage ontology is proposed to reveal all the synthesis steps required to produce a chemical from raw materials, such as crude oil or biomaterials, while a Process ontology is developed to manage data describing the various unit processes associated with each synthesis step. The two ontologies are coupled such that process data, which is the basis for inventory modeling, is linked to lineage data through key concepts like the chemical reaction and reaction participants. To facilitate automated inventory modeling, a series of SPARQL queries, based on the concepts of ancestor and parent, are presented to generate a lineage for a chemical of interest from a set of reaction data. The proposed ontologies and SPARQL queries are evaluated and tested using a case study of nylon-6 production. Once a lineage is established, the process ontology can be used to guide inventory modeling based on both data mining (top-down) and simulation (bottom-up) approaches. The ability to generate a cradle-to-gate life cycle for a chemical represents a key achievement toward the ultimate goal of automated life cycle inventory modeling.

SUBMITTER: Mittal VK

PROVIDER: S-EPMC7336534 | biostudies-literature | 2017 Dec

REPOSITORIES: biostudies-literature

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Toward Automated Inventory Modeling in Life Cycle Assessment: The Utility of Semantic Data Modeling to Predict Real-World Chemical Production.

Mittal Vinit K VK Bailin Sidney C SC Gonzalez Michael A MA Meyer David E DE Barrett William M WM Smith Raymond L RL

ACS sustainable chemistry & engineering 20171201 2

A set of coupled semantic data models, i.e., ontologies, are presented to advance a methodology toward automated inventory modeling of chemical manufacturing in life cycle assessment. The cradle-to-gate life cycle inventory for chemical manufacturing is a detailed collection of the material and energy flows associated with a chemical's supply chain. Thus, there is a need to manage data describing both the lineage (or synthesis pathway) and processing conditions for a chemical. To this end, a Lin ...[more]

PMID: 32632354

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Project description:This study was undertaken to evaluate the use of ontology-based semantic mapping (OS-Mapping) in chemical toxicity assessment. Nineteen chemical-species phenotypic profiles (CSPPs) were constructed by ontologically annotating the toxicity responses reported in more than seven hundred published studies of ten chemicals on six vertebrate species. The CSPPs were semantically compared to more than 29,000 publicly available phenotypic profiles of genes, KEGG (Kyoto Encyclopedia of Genes and Genomes) pathways, and diseases based on a cross-species phenotype ontology. OS-Mapping was shown to differentiate chemical toxicities among themselves as well as within and across species. It also revealed cases of chemical by species interactions. In addition to confirming similar MOAs (mechanisms of action) for a few chemicals, OS-Mapping also generated novel insights into the MOAs underlying some seemingly different, yet phenotypically similar, classes of chemicals. The nature of a unified cross-species phenotype ontology and its representation of diverse knowledge domains allowed the construction of a complete phenotypic continuum for the 17?-ethynylestradiol_fathead minnow across the biological levels of organization, which complemented a similar one derived from the Comparative Toxicogenomics Database but based primarily on 17?-ethynylestradiol-induced molecular phenotypes. Overall, OS-Mapping has been demonstrated to offer a powerful approach to help bridge the gap between the molecular and non-molecular phenotypes of chemicals characterized by using high throughput or traditional omics methods and their apical endpoints of greater regulatory relevance, which are typically phenotypes found at the higher levels of biological organization. OS-Mapping also enables comparative toxicity assessment among chemicals, both within and across species. Furthermore, the semantic analysis of phenotypes can reveal additional novel MOAs for some well-known chemicals and discover candidate MOAs for chemicals that are less molecularly characterized. A full phenotypic continuum based on OS-Mapping will also be conducive to the future development of adverse outcome pathways. As phenomics continues to advance and the ontological annotation of literature becomes more automated, the power of OS-Mapping will be further enhanced.

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Dataset Information

Toward Automated Inventory Modeling in Life Cycle Assessment: The Utility of Semantic Data Modeling to Predict Real-World Chemical Production.

Publications

Toward Automated Inventory Modeling in Life Cycle Assessment: The Utility of Semantic Data Modeling to Predict Real-World Chemical Production.

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