Ontology highlight
ABSTRACT:
SUBMITTER: Erbe R
PROVIDER: S-EPMC7337516 | biostudies-literature | 2020 Jul
REPOSITORIES: biostudies-literature
Erbe Rossin R Kessler Michael D MD Favorov Alexander V AV Easwaran Hariharan H Gaykalova Daria A DA Fertig Elana J EJ
Nucleic acids research 20200701 12
While the methods available for single-cell ATAC-seq analysis are well optimized for clustering cell types, the question of how to integrate multiple scATAC-seq data sets and/or sequencing modalities is still open. We present an analysis framework that enables such integration across scATAC-seq data sets by applying the CoGAPS Matrix Factorization algorithm and the projectR transfer learning program to identify common regulatory patterns across scATAC-seq data sets. We additionally integrate our ...[more]