Ontology highlight
ABSTRACT:
SUBMITTER: Gavrilov AA
PROVIDER: S-EPMC7337940 | biostudies-literature | 2020 Jul
REPOSITORIES: biostudies-literature
Gavrilov Alexey A AA Zharikova Anastasiya A AA Galitsyna Aleksandra A AA Luzhin Artem V AV Rubanova Natalia M NM Golov Arkadiy K AK Petrova Nadezhda V NV Logacheva Maria D MD Kantidze Omar L OL Ulianov Sergey V SV Magnitov Mikhail D MD Mironov Andrey A AA Razin Sergey V SV
Nucleic acids research 20200701 12
Non-coding RNAs (ncRNAs) participate in various biological processes, including regulating transcription and sustaining genome 3D organization. Here, we present a method termed Red-C that exploits proximity ligation to identify contacts with the genome for all RNA molecules present in the nucleus. Using Red-C, we uncovered the RNA-DNA interactome of human K562 cells and identified hundreds of ncRNAs enriched in active or repressed chromatin, including previously undescribed RNAs. Analysis of the ...[more]