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Complexities of Understanding Function from CKD-Associated DNA Variants.

ABSTRACT: Genome-wide association studies (GWASs) have facilitated the unbiased discovery of hundreds of genomic loci associated with CKD and kidney function. The vast majority of disease-associated DNA variants are noncoding. Those that are causal in CKD pathogenesis likely modulate transcription of target genes in a cell type-specific manner. To gain novel biological insights into mechanisms driving the development of CKD, the causal variants (which are usually not the most significant variant reported in a GWAS), their target genes, and causal cell types need to be identified. This functional validation requires a large number of new data sets, complex bioinformatics analyses, and experimental cellular and in vivo studies. Here, we review the basic principles and some of the current approaches being leveraged to assign functional significance to a genotype-phenotype association.

SUBMITTER: Lin J

PROVIDER: S-EPMC7341770 | biostudies-literature | 2020 Jul

REPOSITORIES: biostudies-literature

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Complexities of Understanding Function from CKD-Associated DNA Variants.

Lin Jennie J Susztak Katalin K

Clinical journal of the American Society of Nephrology : CJASN 20200608 7

Genome-wide association studies (GWASs) have facilitated the unbiased discovery of hundreds of genomic loci associated with CKD and kidney function. The vast majority of disease-associated DNA variants are noncoding. Those that are causal in CKD pathogenesis likely modulate transcription of target genes in a cell type-specific manner. To gain novel biological insights into mechanisms driving the development of CKD, the causal variants (which are usually not the most significant variant reported ...[more]

PMID: 32513823

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