Dataset Information

Variations in gut bacterial communities between lesser white-fronted geese wintering at Caizi and Shengjin lakes in China.

ABSTRACT: The avian gut microbiota plays an important role in shaping the health of its host. However, knowledge of gut bacteria in birds lags behind that of other animals. In this study, we investigated the gut bacterial communities of lesser white-fronted geese (Anser erythropus) wintering at Shengjin Lake and Caizi Lake, China, using high-throughput sequencing (Illumina MiSeq). Altogether, 1,053,624 high-quality sequences and 4,405 operational taxonomic units (OTUs) were acquired from 30 fecal samples (15 per lake). The OTUs represented eight phyla and 17 classes from the Caizi Lake samples and seven phyla and 16 classes from the Shengjin Lake samples. Firmicutes, Proteobacteria, Actinobacteria, and Bacteroidetes were the dominant phyla. The spatial distance and the Chao1, Simpson, and Shannon indices showed that the alpha diversity differed significantly between the samples from both lakes. The phylogenetic tree and heatmap analyses showed that all the Caizi Lake samples were clustered together and all the Shengjin Lake samples were clustered together. These findings suggest that diet may be an important driver of gut microbial community structure in the birds from each lake, and the obvious differentiation in their gut microbial structures may indicate that the bacteria are highly sensitive to food sources at both lakes.

SUBMITTER: Liu G

PROVIDER: S-EPMC7349169 | biostudies-literature | 2020 Jul

REPOSITORIES: biostudies-literature

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Variations in gut bacterial communities between lesser white-fronted geese wintering at Caizi and Shengjin lakes in China.

Liu Gang G Gong Zhizhong Z Li Qingyue Q

MicrobiologyOpen 20200323 7

The avian gut microbiota plays an important role in shaping the health of its host. However, knowledge of gut bacteria in birds lags behind that of other animals. In this study, we investigated the gut bacterial communities of lesser white-fronted geese (Anser erythropus) wintering at Shengjin Lake and Caizi Lake, China, using high-throughput sequencing (Illumina MiSeq). Altogether, 1,053,624 high-quality sequences and 4,405 operational taxonomic units (OTUs) were acquired from 30 fecal samples ...[more]

PMID: 32207252

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Project description:BackgroundAnimal movement patterns are the result of both environmental and physiological effects, and the rates of movement and energy expenditure of given movement strategies are influenced by the physical environment an animal inhabits. Greater white-fronted geese in North America winter in ecologically distinct regions and have undergone a large-scale shift in wintering distribution over the past 20?years. White-fronts continue to winter in historical wintering areas in addition to contemporary areas, but the rates of movement among regions, and energetic consequences of those decisions, are unknown. Additionally, linkages between wintering and breeding regions are generally unknown, and may influence within-winter movement rates.MethodsWe used Global Positioning System and acceleration data from 97 white-fronts during two winters to elucidate movement characteristics, model regional transition probabilities using a multistate model in a Bayesian framework, estimate regional energy expenditure, and determine behavior time-allocation influences on energy expenditure using overall dynamic body acceleration and linear mixed-effects models. We assess the linkages between wintering and breeding regions by evaluating the winter distributions for each breeding region.ResultsWhite-fronts exhibited greater daily movement early in the winter period, and decreased movements as winter progressed. Transition probabilities were greatest towards contemporary winter regions and away from historical wintering regions. Energy expenditure was up to 55% greater, and white-fronts spent more time feeding and flying, in contemporary wintering regions compared to historical regions. White-fronts subsequently summered across their entire previously known breeding distribution, indicating substantial mixing of individuals of varying breeding provenance during winter.ConclusionsWhite-fronts revealed extreme plasticity in their wintering strategy, including high immigration probability to contemporary wintering regions, high emigration from historical wintering regions, and high regional fidelity to western regions, but frequent movements among eastern regions. Given that movements of white-fronts trended toward contemporary wintering regions, we anticipate that a wintering distribution shift eastward will continue. Unexpectedly, greater energy expenditure in contemporary wintering regions revealed variable energetic consequences of choice in wintering region and shifting distribution. Because geese spent more time feeding in contemporary regions than historical regions, increased energy expenditure is likely balanced by increased energy acquisition in contemporary wintering areas.

Project description:The "gut fungal microbiome" maintains the immune system, homeostasis, and various physiological functions of an organism. Different factors shape and affect gut fungal diversity and community composition, such as environment, habitat type, food resources, and seasons during migration. Wild birds amid migration are exposed to different habitats with different environments, available food resources, and seasons, which may substantially impact their gut fungal community composition and diversity. The hooded crane (Grus monacha) is a known migratory bird that migrates over long distances and is exposed to varied habitats with different environments and food types. We investigated the differences in gut fungal diversity and community composition between wintering and stopover sites amid three migratory seasons. We deduced the gut fungal pathogenic diversity and community composition during winter, fall, and spring by using high throughput sequencing (Illumina Mi-seq), and the internal transcribed region 2 (ITS2) was examined. Samples were collected from Shengjin Lake in the winter and Lindian during the fall and spring. The dominant fungal phyla found across the three seasons were Ascomycota, Basidiomycota, Zygomycota, and Rozellomycota. The gut fungal alpha diversity showed significant shifts during winter at the wintering site compared with the fall and spring seasons at the stopover site. The fungal community composition exhibited a significant change across the three seasons (ANOSIM p = 0.001). The results also demonstrated that the diversity and relative abundance of potential pathogens also showed divergence in winter compared to fall and spring. This study provides the basis for understanding the discrepancy in gut fungal diversity and community composition during migratory seasons at both wintering and stopover grounds. It also suggests that conservation measures should be applied to the conservation of hooded cranes and other wild birds, as the risk of cross-infection increases during seasonal migration.

Project description:Background:While goose populations worldwide benefit from food provided by farmland, China's threatened wintering goose populations have failed to capitalize on farmland. It has been proposed that, due to an exceptionally intense human pressure on Chinese farmland, geese cannot exploit farmland in their wintering sites and hence are confined to their deteriorating natural habitat. If this were true, locally decreasing this human pressure on farmland 'refuges' would represent a promising conservation measure. Methods:We investigate habitat use of two declining migratory goose species in their core wintering (Yangtze River Floodplain) and stopover (Northeast China Plain) regions, compare the human pressure level at both regions, and adopt a mixed-effect resource selection function model to test how human pressure, food resource type (farmland or wetland/grass), distance to roosts, and their interaction terms influence the utilization of food resources for each species and region. To this aim we use satellite tracking of 28 tundra bean geese Anser serrirostris and 55 greater white-fronted geese A. albifrons, a newly produced 30?m land cover map, and the terrestrial human footprint map. Results:Geese use farmland intensively at their stopover site, but hardly at their wintering site, though both regions have farmland available at a similar proportion. The human pressure on both farmland and wetland/grass is significantly lower at the stopover region compared to the wintering region. At both sites, the two goose species actively select for farmland and/or wetland/grass with a relatively low human pressure, positioned relatively close to their roosting sites. Conclusions:Our findings suggest that if human pressure were to decrease in the farmlands close to the roost, China's wintering geese could benefit from farmland. We recommend setting aside farmland near roosting sites that already experiences a relatively low human pressure as goose refuges, and adopt measures to further reduce human pressure and increase food quality and quantity, to help counter the decline of China's wintering goose populations. Our study has important conservation implications and offers a practical measure for migratory waterfowl conservation in areas of high human-wildlife conflict.

Dataset Information

Variations in gut bacterial communities between lesser white-fronted geese wintering at Caizi and Shengjin lakes in China.

Publications

Variations in gut bacterial communities between lesser white-fronted geese wintering at Caizi and Shengjin lakes in China.

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